DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab18 and Rab8b

DIOPT Version :10

Sequence 1:NP_524744.2 Gene:Rab18 / 44360 FlyBaseID:FBgn0015794 Length:197 Species:Drosophila melanogaster
Sequence 2:NP_775589.1 Gene:Rab8b / 235442 MGIID:2442982 Length:207 Species:Mus musculus


Alignment Length:202 Identity:76/202 - (37%)
Similarity:124/202 - (61%) Gaps:12/202 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 DRAIKLLVIGESGVGKSSLIRRFVENKFDQNHDVTIGMDFKSKVMQVDGIDYKVALWDTAGAERF 67
            |...|||:||:|||||:.|:.||.|:.|:.....|||:|||.:.:::||...|:.:|||||.|||
Mouse     6 DYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERF 70

  Fly    68 RSLTPSFYRKALGAILVYDITSRDSLVKLETWLAELDSYSDNPNIAIIVVGNKID--EERVVDRE 130
            |::|.::||.|:|.:||||||:..|...::.|:..::.::.: ::..:::|||.|  ::|.|.:|
Mouse    71 RTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASS-DVERMILGNKCDMNDKRQVSKE 134

  Fly   131 EGRKFARKHRALFIETSAKCDQFVSDVF----KDVVEKIVSSEYFNNGNAS-AG--LDIASDRDL 188
            .|.|.|..:...|:|||||....|.:.|    :|::.|:  :...|:.|:| ||  :.|...|..
Mouse   135 RGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKL--NRKMNDSNSSGAGGPVKITESRSK 197

  Fly   189 EASASTC 195
            :.|...|
Mouse   198 KTSFFRC 204

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab18NP_524744.2 Rab18 6..165 CDD:206656 65/164 (40%)
Rab8bNP_775589.1 Rab8_Rab10_Rab13_like 6..172 CDD:206659 66/166 (40%)
Switch 1. /evidence=ECO:0000250|UniProtKB:P62820 31..45 4/13 (31%)
Switch 2. /evidence=ECO:0000250|UniProtKB:P62820 63..80 10/16 (63%)

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