DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab18 and Rab8a

DIOPT Version :10

Sequence 1:NP_524744.2 Gene:Rab18 / 44360 FlyBaseID:FBgn0015794 Length:197 Species:Drosophila melanogaster
Sequence 2:NP_446450.2 Gene:Rab8a / 117103 RGDID:621144 Length:207 Species:Rattus norvegicus


Alignment Length:200 Identity:72/200 - (36%)
Similarity:120/200 - (60%) Gaps:8/200 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 DRAIKLLVIGESGVGKSSLIRRFVENKFDQNHDVTIGMDFKSKVMQVDGIDYKVALWDTAGAERF 67
            |...|||:||:|||||:.::.||.|:.|:.....|||:|||.:.:::||...|:.:|||||.|||
  Rat     6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 70

  Fly    68 RSLTPSFYRKALGAILVYDITSRDSLVKLETWLAELDSYSDNPNIAIIVVGNKID--EERVVDRE 130
            |::|.::||.|:|.:||||||:..|...:..|:..::.:: :.::..:::|||.|  ::|.|.:|
  Rat    71 RTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKE 134

  Fly   131 EGRKFARKHRALFIETSAKCDQFVSDVF----KDVVEKIVSSEYFNNGNASA-GLDIASDRDLEA 190
            .|.|.|..:...|:|||||.:..|.:.|    :|:..|:......|:...|: |:.|..::....
  Rat   135 RGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSSHGVKITVEQQKRT 199

  Fly   191 SASTC 195
            |...|
  Rat   200 SFFRC 204

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab18NP_524744.2 Rab18 6..165 CDD:206656 64/164 (39%)
Rab8aNP_446450.2 Rab8_Rab10_Rab13_like 6..172 CDD:206659 65/166 (39%)
Switch 1. /evidence=ECO:0000250|UniProtKB:P62820 31..45 4/13 (31%)
Switch 2. /evidence=ECO:0000250|UniProtKB:P62820 63..80 10/16 (63%)

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