DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rab18 and si:dkey-16l2.16

DIOPT Version :10

Sequence 1:NP_524744.2 Gene:Rab18 / 44360 FlyBaseID:FBgn0015794 Length:197 Species:Drosophila melanogaster
Sequence 2:XP_021327130.1 Gene:si:dkey-16l2.16 / 100003902 ZFINID:ZDB-GENE-141219-36 Length:209 Species:Danio rerio


Alignment Length:192 Identity:72/192 - (37%)
Similarity:114/192 - (59%) Gaps:11/192 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 KLLVIGESGVGKSSLIRRFVENKFDQNHDVTIGMDFKSKVMQVDGIDYKVALWDTAGAERFRSLT 71
            |||:||:|.||||||:.||.:|.|..::..|||:|||.:.:::||...|:.:|||||.||||::|
Zfish    11 KLLIIGDSNVGKSSLLLRFADNSFSGSYITTIGVDFKIRTVEIDGERVKLQIWDTAGQERFRTIT 75

  Fly    72 PSFYRKALGAILVYDITSRDSLVKLETWLAELDSYSDNPNIAIIVVGNKIDE--ERVVDREEGRK 134
            .::||...|.|:|||:|:.:|.|.::.||.|:....|  |:..|:||||.|:  :::||.::..:
Zfish    76 STYYRNTHGVIIVYDVTNPESFVNVKRWLNEISQNCD--NVCKILVGNKNDDPSKKLVDTQDAMR 138

  Fly   135 FARKHRALFIETSAKCDQFVSDVFKDVVEKIVSSEYFNNGNASA-------GLDIASDRDLE 189
            |.........|||||.:..|.::|......::.::..:...|..       .:.|.|.||.|
Zfish   139 FGESVGVRLFETSAKENINVEEMFMAFTHMVLRAKKQSQSRAEREREREKDTVHINSHRDRE 200

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab18NP_524744.2 Rab18 6..165 CDD:206656 66/159 (42%)
si:dkey-16l2.16XP_021327130.1 P-loop containing Nucleoside Triphosphate Hydrolases 4..209 CDD:476819 72/192 (38%)

Return to query results.
Submit another query.