DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG46339 and Lnpep

DIOPT Version :9

Sequence 1:NP_001263001.1 Gene:CG46339 / 44359 FlyBaseID:FBgn0285963 Length:1194 Species:Drosophila melanogaster
Sequence 2:NP_001106874.1 Gene:Lnpep / 171105 RGDID:621752 Length:1025 Species:Rattus norvegicus


Alignment Length:1215 Identity:331/1215 - (27%)
Similarity:516/1215 - (42%) Gaps:248/1215 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 SFTNPKLQIP--LMASAIY--APTTITTNTTSTAGTPTSAKNASASASASASASLSSPAGPSAAG 84
            :|||.:||:|  ::.::::  .|..:..                      |......|..|.   
  Rat     3 TFTNDRLQLPRNMIENSMFEEEPDVVDL----------------------AKEPCLHPLEPD--- 42

  Fly    85 SASTSSAPAGGGPWQGLVAKLRNFKLDDTKNIRKRFHFDYISKDRFLG--------GQLKTKNGQ 141
              .....|.|.   :.||..|...::|:.:.       ||.|..:.||        |...:..| 
  Rat    43 --EVEYEPRGS---RLLVRGLGEHEMDEDEE-------DYESSAKLLGMSFMNRSSGLRNSATG- 94

  Fly   142 KYVFNGPPSGV--YVSKACLIIAAFITVLALLFTIAITYFVTRQGLNPKEVTPPSCITADHPDVN 204
               :...|.|.  ..|...|:|..|:.|:| :..|.:.|.:.|     ...|...|...:.....
  Rat    95 ---YRQSPDGTCSVPSARTLVICVFVIVVA-VSVIMVIYLLPR-----CTFTKEGCHKTNQSAEL 150

  Fly   205 ATPIQTAGWVSMNSPPPLQAATPTPMASPTPTNTPTVTTTLAMPASSEKPEIRMVDPKVGDIPVV 269
            ..||.|.|.|.    |..|...||.:.                                      
  Rat   151 IQPIATNGKVF----PWAQIRLPTAII-------------------------------------- 173

  Fly   270 EPAAGEVEDNTTKPINRPLKLYEGWRPLHYSLLIEPSVATSISNGSLTIEIE-----RDVSKVTS 329
                                      |..|.|.:.|::.:....||:||.::     ||      
  Rat   174 --------------------------PQRYELSLHPNLTSMTFRGSVTISLQALQDTRD------ 206

  Fly   330 WEPIVLDVHNVSISNVRVIRALADGASNASEEQDLD-FDSDYGEDNATFVINLSKTLAVETQL-- 391
               |:|.....:||:|..:.|:      :|:|:.:: .:..|.|..|        .:|.|:.|  
  Rat   207 ---IILHSTGHNISSVTFMSAV------SSQEKQVEILEYPYHEQIA--------VVAPESLLTG 254

  Fly   392 -RVLLSLDFVSQVTDTLQGIYKTSYTNPDTKNEEW-MISTQFSPVDARRAFPCFDRPDMKANFSI 454
             ...|.:::.:.::::..|.|..:||  |..||:. ..:|||.|:.||.||||||.|..||.|.|
  Rat   255 HNYTLKIEYSANISNSYYGFYGITYT--DKSNEKKNFAATQFEPLAARSAFPCFDEPAFKATFII 317

  Fly   455 SIVRPMQFKMALSNMPKSGSRRFRRGFIRDDFETTPKMPTYLVAFIVSNMVDSRLASQDSGLTPR 519
            .|.|. :...|||||||..|.....|.|:|:|..:.||.||||||||..|   |..|||...| .
  Rat   318 KITRD-EHHTALSNMPKKSSVPTEEGLIQDEFSESVKMSTYLVAFIVGEM---RNLSQDVNGT-L 377

  Fly   520 VEIWTRPQFVGMTHYAYKMVRKFLPYYEDFFGIKNKLPKIDLVSVPDFGFAAMENWGLITFRDSA 584
            |.::..|:.:...::|.....|.|.:|:::|.|:..|.|:|||::|||...|||||||:|||:..
  Rat   378 VSVYAVPEKIDQVYHALDTTVKLLEFYQNYFEIQYPLKKLDLVAIPDFEAGAMENWGLLTFREET 442

  Fly   585 LLVPEDLQLASSSEHMQVVAGIIAHELAHQWFGNLVTPKWWDDLWLKEGFACYMSYKALEHAHPE 649
            ||..   ...||....::|..||||||||||||||||.:||:||||.||||.:|.|.::|....|
  Rat   443 LLYD---NATSSVADRKLVTKIIAHELAHQWFGNLVTMQWWNDLWLNEGFATFMEYFSVEKIFKE 504

  Fly   650 FQSMDTLTMLEFKESMEHDADNTSHAISFDVRSTNDVRRIFDPISYSKGTILLRMLNSIVGDVAF 714
            ..|.:......|| :|..|:.|:||.||..|:|:..:..:||.:||.||..||.||.|.:.:..|
  Rat   505 LNSYEDFLDARFK-TMRKDSLNSSHPISSSVQSSEQIEEMFDSLSYFKGASLLLMLKSYLSEDVF 568

  Fly   715 RSATRDLLKKFAYGNMDRDDLWAMLTRHGHEQGTLPKDLSVKQIMDSWITQPGYPVVNVERRGAD 779
            :.|....|...:|..:..||||.....      ...|.|.||::|.:|..|.|:|:|.|:|:|.:
  Rat   569 QHAIILYLHNHSYAAIQSDDLWDSFNE------VTGKTLDVKKMMKTWTLQKGFPLVTVQRKGTE 627

  Fly   780 LVLRQERY---LLPSKNTADQS-TWFIPITFETDELRKGDNIPTHWMRSEDEEELIVGNVFAHSS 840
            |:|:|||:   :.|....:|.| .|.|||::.||    |.|...:...|..:::..|.|:     
  Rat   628 LLLQQERFFPSMQPEIQDSDTSHLWHIPISYVTD----GRNYSEYRSVSLLDKKSDVINL----- 683

  Fly   841 NSDNV--IYLNLNRQGYYRVNYDMTSWLA----LKKNFSTLPRITRAQLLDDALHLSQAEYLTYD 899
             ::.|  :.:|.|..|||.|:|....|.|    ||:|...|....||.|:::...|:...    .
  Rat   684 -TEQVQWVKVNTNMTGYYIVHYAHDGWAALINQLKRNPYVLSDKDRANLINNIFELAGLG----K 743

  Fly   900 IPLTFLMELFDAVDDELLWIAAKPGL--NYLIYNLKREPAYETFRAFMKFIVRPAFDHYGLHE-- 960
            :||....:|.|.:.:|.........|  ..|||||..:..:....:  :.:.|       :|:  
  Rat   744 VPLQMAFDLIDYLRNETHTAPITEALFQTDLIYNLLEKLGHMDLSS--RLVTR-------VHKLL 799

  Fly   961 ---------PDNESHLQLKHRALVAYFACKFNYDRCTQKAQMKFREWMRDPKNNPIKPNLKSVIY 1016
                     .|..:....:.|:.:..|||..:.:.||..|...|..||.......:..::.:.::
  Rat   800 QNQIQQQTWTDEGTPSMRELRSALLEFACAHSLENCTTMATKLFDGWMASNGTQSLPTDVMTTVF 864

  Fly  1017 CTSLAEGSSPEWYFAYKQYKTTTSASEKEEILTSLGCTTKP----WLLSKYLNMTINPTSGILKQ 1077
              .:...:...|.|.:..|.:..|.:||::||.:|..:...    ||:...|:..|     |..|
  Rat   865 --KVGARTEKGWLFLFSMYSSMGSEAEKDKILEALASSADAHKLYWLMKSSLDGDI-----IRTQ 922

  Fly  1078 DGALAFRAVASNAIGHEIAFDFLQGNIKEIVEYYGDGFSTLSEMIKSLTIYMNKDYHKHQLLDL- 1141
            ..:|..|.|.....||.:|:||::.|..::|..:..|..|:..::...|...:...|..::.:. 
  Rat   923 KLSLIIRTVGRQFPGHLLAWDFVKENWNKLVHKFHLGSYTIQSIVAGSTHLFSTKTHLSEVQEFF 987

  Fly  1142 ----AATCRKLGLHAVESAIELALEQVNNNIYWRSHSYHSLKNFL 1182
                .||   |.|..|:.|.|:    :..||.|.:.:..:|..:|
  Rat   988 ENQSEAT---LQLRCVQEAFEV----IELNIQWMARNLKTLTLWL 1025

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
CG46339NP_001263001.1 Peptidase_M1 296..698 CDD:279741 156/411 (38%)
M1_APN_2 297..769 CDD:189008 178/481 (37%)
ERAP1_C 846..1138 CDD:288671 70/312 (22%)