DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment drl and Erbb4

DIOPT Version :9

Sequence 1:NP_001260566.1 Gene:drl / 44355 FlyBaseID:FBgn0015380 Length:645 Species:Drosophila melanogaster
Sequence 2:NP_067719.2 Gene:Erbb4 / 59323 RGDID:620486 Length:1308 Species:Rattus norvegicus


Alignment Length:566 Identity:136/566 - (24%)
Similarity:213/566 - (37%) Gaps:167/566 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   149 FKRKKICL----------RE--------EQDSAHEEYDDDDLDLLQTARKGHGGD-----IHYVD 190
            |.|.|||:          ||        |.||..|:.:|.    |.|.. |.|.|     .|:.|
  Rat   526 FSRGKICIESCNLYDGEFREFENGSICVECDSQCEKMEDG----LLTCH-GPGPDNCTKCSHFKD 585

  Fly   191 -RNDEHVVANGHQA--------PEKQR------PVVTESPVGRGNSGGSKRD--FDPMLRENLVP 238
             .|......:|.|.        .::.|      |..|:     |.:|.:..|  :.|....:.:|
  Rat   586 GPNCVEKCPDGLQGANSFIFKYADQDRECHPCHPNCTQ-----GCNGPTSHDCIYYPWTGHSTLP 645

  Fly   239 P-------ASGLVTLIVGGILALVLVSTLILIAYCAKGPSKRHPSNGVHLIKTSSFQRLPTISST 296
            .       |:|    ::||:..||:::....:....|...|:....  ..::|...:.|      
  Rat   646 QHARTPLIAAG----VIGGLFILVIMALTFAVYVRRKSIKKKRALR--RFLETELVEPL------ 698

  Fly   297 AHNSIYVCPSTITPTYATLTRPFREYEHEPEEFNRRLQELTVQKCRVRLSCLVQEGNFGRIYRGT 361
                   .||...|..|.|               |.|:|..:::.:|     :..|.||.:|:|.
  Rat   699 -------TPSGTAPNQAQL---------------RILKETELKRVKV-----LGSGAFGTVYKGI 736

  Fly   362 YNDCQEVLVKTVA----QHASQLQVNL-LLQESMMLYEASHPNVLSVLGISIEDYATPFVLYAAT 421
            :....|.:...||    ...:..:.|: .:.|::::....||:::.:||:.:.            
  Rat   737 WVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASVDHPHLVRLLGVCLS------------ 789

  Fly   422 GSVRNLKSFLQDPSYARSVTTIQTVL------------------MGSQL--------AMAMEHLH 460
                               .|||.|.                  :||||        |..|.:|.
  Rat   790 -------------------PTIQLVTQLMPHGCLLEYVHEHKDNIGSQLLLNWCVQIAKGMMYLE 835

  Fly   461 NHGVIHKDIAARNCVIDDQLRVKLTDSALSRDLFPGD---YNSLGDGEYRPIKWLSLEALQKSHY 522
            ...::|:|:||||.::.....||:||..|:| |..||   ||:  ||...||||::||.:....:
  Rat   836 ERRLVHRDLAARNVLVKSPNHVKITDFGLAR-LLEGDEKEYNA--DGGKMPIKWMALECIHYRKF 897

  Fly   523 NEGSDVWSFGVLMWEMCTLGKLPYAEIDPYEMEHYLKDGYRLAQPFNCPDELFTIMAYCWASMPA 587
            ...|||||:||.:||:.|.|..||..|...|:...|:.|.||.||..|..:::.:|..||.....
  Rat   898 THQSDVWSYGVTIWELMTFGGKPYDGIPTREIPDLLEKGERLPQPPICTIDVYMVMVKCWMIDAD 962

  Fly   588 ERPSFSQLQICLSEFHTQITRYVXPAVLKHAKTCKYNKRRRRKIFQ 633
            .||.|.:|....|.......||:   |::.....|.......|.||
  Rat   963 SRPKFKELAAEFSRMARDPQRYL---VIQGDDRMKLPSPNDSKFFQ 1005

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
drlNP_001260566.1 WIF 21..157 CDD:128745 5/17 (29%)
PTK_Ryk 336..606 CDD:270639 81/303 (27%)
Pkinase_Tyr 343..599 CDD:285015 80/289 (28%)
Erbb4NP_067719.2 Recep_L_domain 55..167 CDD:395817
Furin-like 186..332 CDD:395614
Recep_L_domain 358..478 CDD:395817
GF_recep_IV 502..634 CDD:405525 28/117 (24%)
TM_ErbB4 642..685 CDD:213053 9/46 (20%)
Nuclear localization signal. /evidence=ECO:0000250 676..684 2/7 (29%)
PTKc_HER4 710..1012 CDD:173655 92/353 (26%)
PPxy motif 1 1032..1035
PPxY motif 2 1298..1301
PDZ-binding 1306..1308
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1025
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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