DRSC/TRiP Functional Genomics Resources

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Protein Alignment drl and ntrk1

DIOPT Version :10

Sequence 1:NP_001260566.1 Gene:drl / 44355 FlyBaseID:FBgn0015380 Length:645 Species:Drosophila melanogaster
Sequence 2:XP_002939035.2 Gene:ntrk1 / 100489637 XenbaseID:XB-GENE-923001 Length:808 Species:Xenopus tropicalis


Alignment Length:449 Identity:109/449 - (24%)
Similarity:189/449 - (42%) Gaps:91/449 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   204 PEKQRPVVTESPVGRGNSGGSKRDFDPMLRENLVPPASGLVTLIVGGILALVLVSTLILIAYCAK 268
            ||:..| |:.||.|.|||  :.......:.||...     |::.||..:...|...|||||....
 Frog   398 PEEPIP-VSLSPEGGGNS--TYTTTVETVEENTFG-----VSVAVGLAVFACLFLLLILIALNKC 454

  Fly   269 GPSKRHPSNGVH----------LIKTSSFQRLPTISSTA-------------HNSIYVCPSTITP 310
            |   ||...|::          |..:..|....|...|:             .|..|.|.:.:  
 Frog   455 G---RHSKFGINRAAVLAQEDDLAMSLHFMNFGTSPLTSAEGKLDGMKPNFIENPQYFCDACV-- 514

  Fly   311 TYATLTRPFREYEHEPEEFNRRLQELTVQKCRVRLSCLVQEGNFGRIYRGTY------NDCQEVL 369
                        :|             :::..:.|...:.||.||:::...:      |:...|.
 Frog   515 ------------QH-------------IKRRDIVLKWELGEGAFGKVFLAEFYNLTPENEKTLVA 554

  Fly   370 VKTVAQHASQLQVNLLLQESMMLYEASHPNVLSVLGISIEDYATPFVL---YAATGSV-RNLKSF 430
            ||.:.:.....:.: ..:|:.:|....|.:::...|:..:  ..|.::   |...|.: |.|:|.
 Frog   555 VKALKEATENARQD-FQREAELLTVLQHEHIVKFYGVCTD--GEPLIMVFEYMKHGDLNRFLRSH 616

  Fly   431 LQDPS---------YARSVTTIQTVLMGSQLAMAMEHLHNHGVIHKDIAARNCVIDDQLRVKLTD 486
            ..|..         |.: :...|.:.:.||:|..|.:|.:...:|:|:|.|||::.:.|.||:.|
 Frog   617 GPDAKILDNGNGQPYGQ-LNLTQMLQIASQIASGMVYLASLHFVHRDLATRNCLVGNNLVVKIGD 680

  Fly   487 SALSRDLFPGDYNSLGDGEYRPIKWLSLEALQKSHYNEGSDVWSFGVLMWEMCTLGKLPYAEIDP 551
            ..:|||::..||..:|.....||:|:..|::....:...||:|||||::||:.|.||.|:.::..
 Frog   681 FGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLSN 745

  Fly   552 YEMEHYLKDGYRLAQPFNCPDELFTIMAYCWASMPAERPSFSQLQICLSEFHTQITRYV 610
            .|....:..|.:|.:|..||.|::.||..||...|.:|       :.:.|.|.::...|
 Frog   746 TEAIECITQGRQLERPRTCPTEVYNIMQGCWQREPQQR-------LNIKEIHNKLQALV 797

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
drlNP_001260566.1 WIF 21..157 CDD:128745
PTK_Ryk 336..606 CDD:270639 75/288 (26%)
ntrk1XP_002939035.2 LRR_8 97..156 CDD:404697
leucine-rich repeat 99..122 CDD:275378
leucine-rich repeat 123..145 CDD:275378
LRRCT_2 157..201 CDD:465313
Ig 211..292 CDD:472250
Ig strand B 220..224 CDD:409353
Ig strand C 233..237 CDD:409353
Ig strand E 257..261 CDD:409353
Ig strand F 272..277 CDD:409353
Ig strand G 285..288 CDD:409353
Ig 295..390 CDD:472250
Ig strand B 310..314 CDD:409353
Ig strand C 323..327 CDD:409353
Ig strand E 355..359 CDD:409353
Ig strand F 369..374 CDD:409353
Ig strand G 382..385 CDD:409353
PTKc_TrkA 516..795 CDD:270674 76/302 (25%)
Blue background indicates that the domain is not in the aligned region.

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