DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shark and src

DIOPT Version :9

Sequence 1:NP_524743.2 Gene:Shark / 44353 FlyBaseID:FBgn0015295 Length:939 Species:Drosophila melanogaster
Sequence 2:XP_017953215.1 Gene:src / 496893 XenbaseID:XB-GENE-489820 Length:544 Species:Xenopus tropicalis


Alignment Length:571 Identity:149/571 - (26%)
Similarity:246/571 - (43%) Gaps:106/571 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   423 KPKAASPATPPTPVSPHSHH-----QHPHVPALTITKKKQKE---------------NSSSMFNT 467
            ||:...|.:....::..||.     .....|:.::...:|..               |.|.    
 Frog    10 KPREGGPRSRSLDIAEGSHQPFTSLSASQTPSKSLDSHRQPAQPFGGNCDLTPFGGVNFSD---- 70

  Fly   468 LRLTSPKK------------ALFDMNSLRKNKSKGKRSDSESSVSGSLAGTEQELQAAAPML-KS 519
             .:|||::            ||:|..|..:.....|:.:....|:    .|..:::.....| :|
 Frog    71 -TITSPQRIGPLAGGVTTFVALYDYESRTETDLSFKKGERLQIVN----NTRPDMREGDWWLARS 130

  Fly   520 LSFSTEFSTFNADGVTGSGAAAAGEVYNVPRNNTPIEIDLPPIAQKTEAEVEYFTKSDVAIERER 584
            || |.:.....::.|..|.:..|.|.|               :.:.|..|.|...   :::|..|
 Frog   131 LS-SGQTGYIPSNYVAPSDSIQAEEWY---------------LGKITRREAERLL---LSLENPR 176

  Fly   585 AGQWIGNGYQPTMDV--LSLLDQ------QIKAPAVARLNSLGPNASTESEMAS----------- 630
             |.::....:.|...  ||:.|.      .:|...:.:|:|.|...::.::.:|           
 Frog   177 -GTFLVRESETTKGAYCLSVSDYDANRGLNVKHYKIRKLDSGGFYITSRTQFSSLQQLVAYYSKH 240

  Fly   631 ---YLHRKCSGTPSTPSATEVEAAKLRFFIEPEKLVLDREIGHGEFGSVHSG-----WLLRKSGA 687
               ..||..:..|:....|: ..:|..:.|..:.|.|:.::|.|.||.|..|     |       
 Frog   241 ADGLCHRLTTVCPTAKPQTQ-GLSKDAWEIPRDSLRLELKLGQGCFGEVWMGVSVGTW------- 297

  Fly   688 GEESRLEVAIKMLSDEHSNKQEFLREASVMMRLEHKCIVRLIGIAKGEMLMMVQELAPLGSMLQY 752
              .....||||.|.....:.:.||:||.||.:|.|:.:|:|..:...|.:.:|.|....||:|.:
 Frog   298 --NGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDF 360

  Fly   753 ILDHGHEITANAELKVWASQIACGMHYLESQHFVHRDLAARNILLTARHQAKISDFGMSRSLRPG 817
            :...........:|...|:|||.||.|:|..::|||||.|.|||:......|::|||::|.:.  
 Frog   361 LKGEMGRYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIE-- 423

  Fly   818 STEYQFTQGGRWPIRWYAPESFNLGIFSHASDVWSFGVTIWEMFSLGAPPYGEISNVDAIKLVDS 882
            ..||...||.::||:|.|||:...|.|:..|||||||:.:.|:.:.|..||..:.|.:.:..|:.
 Frog   424 DNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 488

  Fly   883 GERLPQPNLCPAYIYAVMQSCWKERPKDRPTFVYLTEFF-----ARDPDYQ 928
            |.|:|.|..||..::.:|..||::.|::||||.||..|.     |.:|.||
 Frog   489 GYRMPCPPDCPESLHDLMCQCWRKDPEERPTFEYLQAFLEDYFTATEPQYQ 539

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SharkNP_524743.2 SH2_Nterm_shark_like 8..91 CDD:198210
Ank_2 <112..184 CDD:289560
ANK 117..241 CDD:238125
ANK repeat 124..151 CDD:293786
ANK repeat 153..184 CDD:293786
Ank_2 158..247 CDD:289560
ANK repeat 186..217 CDD:293786
ANK repeat 220..245 CDD:293786
Ank_4 224..274 CDD:290365
SH2_Cterm_shark_like 287..395 CDD:198211
TyrKc 662..921 CDD:197581 94/263 (36%)
PTKc_Syk_like 666..926 CDD:270650 94/269 (35%)
srcXP_017953215.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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