DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shark and FER

DIOPT Version :9

Sequence 1:NP_524743.2 Gene:Shark / 44353 FlyBaseID:FBgn0015295 Length:939 Species:Drosophila melanogaster
Sequence 2:NP_524288.3 Gene:FER / 41118 FlyBaseID:FBgn0000723 Length:1325 Species:Drosophila melanogaster


Alignment Length:506 Identity:135/506 - (26%)
Similarity:223/506 - (44%) Gaps:88/506 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   421 NMKPKAASPATPPTPVSPHSHHQHPHVPALTITKKKQKENSSSMFNTLRLTSPKKALFDMNSLRK 485
            |..|....|..|...:|  .|..||.            |:||..             .|.||   
  Fly   878 NCPPAGQKPVKPSVQIS--GHKDHPF------------ESSSGE-------------LDENS--- 912

  Fly   486 NKSKGKRSDSESSVSGSLAGTEQELQAAAPMLKSLSFSTEFSTFNADGVTGSGAAAAGEVYNVPR 550
            ::......:.|.|.|..:...:........:..|:|.||....:..:...|.          :||
  Fly   913 DRDIDNDEEEEDSASDDVLSMKDHCYCVPSLAASISLSTNRPLYEEEWFHGV----------LPR 967

  Fly   551 NNTPIEIDLPPIAQKTEAEVEYFTKSDVAIERER---AGQWIGNGYQPTMDVLSLLDQQIKAPAV 612
            ..         :.:....:.::..:..:..|..:   :..|  ||::..:         ::....
  Fly   968 EE---------VVRLLNNDGDFLVRETIRNEESQIVLSVCW--NGHKHFI---------VQTTGE 1012

  Fly   613 ARLNSLGPNASTESEMASYLHRKCSGTPSTPSATEV---EAAKLRFFIEPEKLVLDREIGHGEFG 674
            ......||..::..|:  .:|:..|..|.|..:..:   ...:.|:.:..:.:||...||.|.||
  Fly  1013 GNFRFEGPPFASIQEL--IMHQYHSELPVTVKSGAILRRPVCRERWELSNDDVVLLERIGRGNFG 1075

  Fly   675 SVHSGWLLRKSGAGEESRLEVAIK----MLSDEHSNKQEFLREASVMMRLEHKCIVRLIGI-AKG 734
            .|:...|       :.::|:||:|    .|.||  .|::||:|..::.:.:|..||:|||| .:.
  Fly  1076 DVYKAKL-------KSTKLDVAVKTCRMTLPDE--QKRKFLQEGRILKQYDHPNIVKLIGICVQK 1131

  Fly   735 EMLMMVQELAPLGSMLQYILDHGHEITANAELKVWASQIACGMHYLESQHFVHRDLAARNILLTA 799
            :.:|:|.||...||:|.|:..:.:.:|...::.: ....|.||.||||::.:||||||||.|:..
  Fly  1132 QPIMIVMELVLGGSLLTYLRKNSNGLTTRQQMGM-CRDAAAGMRYLESKNCIHRDLAARNCLVDL 1195

  Fly   800 RHQAKISDFGMSRSLRPGSTEYQFTQGGRW-PIRWYAPESFNLGIFSHASDVWSFGVTIWEMFSL 863
            .|..|||||||||.    ..||..:.|.:. |::|.|||:.|.|.::...||||:|:.:||:||.
  Fly  1196 EHSVKISDFGMSRE----EEEYIVSDGMKQIPVKWTAPEALNFGKYTSLCDVWSYGILMWEIFSK 1256

  Fly   864 GAPPYGEISNVDAIKLVDSGERLPQPNLCPAYIYAVMQSCWKERPKDRPTF 914
            |..||..::|..|.:.:|:|.|:|.|...|..:|.:|..||....:.||.|
  Fly  1257 GDTPYSGMTNSRARERIDTGYRMPTPKSTPEEMYRLMLQCWAADAESRPHF 1307

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SharkNP_524743.2 SH2_Nterm_shark_like 8..91 CDD:198210
Ank_2 <112..184 CDD:289560
ANK 117..241 CDD:238125
ANK repeat 124..151 CDD:293786
ANK repeat 153..184 CDD:293786
Ank_2 158..247 CDD:289560
ANK repeat 186..217 CDD:293786
ANK repeat 220..245 CDD:293786
Ank_4 224..274 CDD:290365
SH2_Cterm_shark_like 287..395 CDD:198211
TyrKc 662..921 CDD:197581 99/259 (38%)
PTKc_Syk_like 666..926 CDD:270650 97/255 (38%)
FERNP_524288.3 F-BAR_Fes_Fer 7..243 CDD:153341
SH2_Fps_family 953..1039 CDD:198224 12/117 (10%)
TyrKc 1063..1311 CDD:197581 99/259 (38%)
PTKc_Fes_like 1067..1315 CDD:270637 97/255 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45468372
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24418
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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