DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shark and Txk

DIOPT Version :9

Sequence 1:NP_524743.2 Gene:Shark / 44353 FlyBaseID:FBgn0015295 Length:939 Species:Drosophila melanogaster
Sequence 2:NP_001019426.1 Gene:Txk / 305311 RGDID:1306481 Length:526 Species:Rattus norvegicus


Alignment Length:531 Identity:153/531 - (28%)
Similarity:231/531 - (43%) Gaps:129/531 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   489 KGKRSDSESSVSGSLAGTEQELQAAAPMLKSLSFSTEFSTFNADGVTGSGAAAAGEVYNVPRNNT 553
            :|:|..:..|:|     .|:||.......:...||.         :.|...::.|.|.  |....
  Rat    22 QGRRVTTRISLS-----REEELSEKHSQRQRQWFSK---------LMGKSQSSRGGVQ--PSKRR 70

  Fly   554 PIEIDLPPIAQK-TEAEVEYFTKSD--------VAIERE--------------RAGQWIGN-GYQ 594
            |    |||:.|: ||..:......|        :|::|.              ||...:|| |..
  Rat    71 P----LPPLPQEFTEERIRVKALYDFLPREPCNLALKRAEEYLILERCDPHWWRARDRLGNEGLI 131

  Fly   595 PTMDVLS-----------------------LLDQQIKAPA--VARLNSLG---------PNASTE 625
            |:..|..                       ||.|:.|..|  |.....||         ....|:
  Rat   132 PSNYVTENRLTNLETYEWYHKNITRDQTERLLRQEAKEGAFIVRDSRHLGSYTISVFTRARRHTQ 196

  Fly   626 SEMASY-LHRKCSGT---------PSTPSATEVE-------AAKLRF------------------ 655
            |.:..| :.:..||.         ||.|...:..       .::||:                  
  Rat   197 SSIKHYQIKKNDSGQWYVTERHLFPSVPELIQYHQYNAAGLMSRLRYPVGLLGSCLPATSGFSYE 261

  Fly   656 --FIEPEKLVLDREIGHGEFGSVHSG-WLLRKSGAGEESRLEVAIKMLSDEHSNKQEFLREASVM 717
              .|:|.:|...:|||.|:||.|:.| |         .:|:.||||.:::...::::|:.||.||
  Rat   262 KWEIDPSELTFVKEIGSGQFGVVYLGEW---------RARIRVAIKAINEGSMSEEDFIEEAKVM 317

  Fly   718 MRLEHKCIVRLIGIA-KGEMLMMVQELAPLGSMLQYILDHGHEITANAELKVWASQIACGMHYLE 781
            |:|.|..:|:|.|:. :.:.|.:|.|....|.:|.|:.:...:: ..|.|......|..||.|||
  Rat   318 MKLSHSRLVQLYGVCIQQKPLYIVTEFMENGCLLDYLRERKGKL-PKALLLSMCQDICEGMAYLE 381

  Fly   782 SQHFVHRDLAARNILLTARHQAKISDFGMSRSLRPGSTEYQFTQGGRWPIRWYAPESFNLGIFSH 846
            ...::||||||||.|:::....|||||||:|.:.  ..||..:.|.::|::|..||.|:...:|.
  Rat   382 KSCYIHRDLAARNCLVSSACVVKISDFGMARYVL--DDEYISSSGAKFPVKWSPPEVFHFNKYSS 444

  Fly   847 ASDVWSFGVTIWEMFSLGAPPYGEISNVDAIKLVDSGERLPQPNLCPAYIYAVMQSCWKERPKDR 911
            .||||||||.:||:|:.|..|:...||:..::.:..|.||.:|:|.|..||.||.|||.|.||.|
  Rat   445 KSDVWSFGVLMWEVFTEGKMPFENKSNLQVVEAISKGFRLYRPHLAPMSIYGVMYSCWHESPKGR 509

  Fly   912 PTFVYLTEFFA 922
            |||..|.:..|
  Rat   510 PTFAELLQVLA 520

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SharkNP_524743.2 SH2_Nterm_shark_like 8..91 CDD:198210
Ank_2 <112..184 CDD:289560
ANK 117..241 CDD:238125
ANK repeat 124..151 CDD:293786
ANK repeat 153..184 CDD:293786
Ank_2 158..247 CDD:289560
ANK repeat 186..217 CDD:293786
ANK repeat 220..245 CDD:293786
Ank_4 224..274 CDD:290365
SH2_Cterm_shark_like 287..395 CDD:198211
TyrKc 662..921 CDD:197581 102/260 (39%)
PTKc_Syk_like 666..926 CDD:270650 102/259 (39%)
TxkNP_001019426.1 SH3_TXK 84..138 CDD:212840 10/53 (19%)
SH2_Tec_Txk 142..247 CDD:198261 18/104 (17%)
PKc_like 265..520 CDD:304357 104/266 (39%)
Pkinase_Tyr 270..519 CDD:285015 102/260 (39%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0197
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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