DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shark and Srms

DIOPT Version :9

Sequence 1:NP_524743.2 Gene:Shark / 44353 FlyBaseID:FBgn0015295 Length:939 Species:Drosophila melanogaster
Sequence 2:NP_035611.3 Gene:Srms / 20811 MGIID:101865 Length:507 Species:Mus musculus


Alignment Length:427 Identity:123/427 - (28%)
Similarity:192/427 - (44%) Gaps:83/427 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   543 GEVYNVPRNNTPIEIDLPPIAQKTEAEVE-------YFTKSDVAIERERAGQWIGNGYQPTMDVL 600
            |:.....|.:.|....|.|:....:|..|       ||:    .|.|.:|.|             
Mouse   100 GDYIFAQRLSGPPSTGLVPVTYLAKATPEPPSDQPWYFS----GISRAQAQQ------------- 147

  Fly   601 SLLDQQIKAPAVARL----NSLGPNASTESEMASYLHRKCSGTPS----------TPSATEVEAA 651
             ||.....||....:    :|:|..:.:....|...|.:....||          .||..    |
Mouse   148 -LLLSPANAPGAFLIRPSESSIGGYSLSVRAQAKVCHYRICMAPSGSLYLQEGQLFPSLD----A 207

  Fly   652 KLRFF-----------IEP----------------EKLVLDREIGHGEFGSVHSG-WLLRKSGAG 688
            .|.::           ::|                .:.||.|::|.|.||.|..| ||       
Mouse   208 LLAYYKTNWKLIQNPLLQPCIPQIPLVQDEWERPRSEFVLRRKLGEGFFGEVWEGLWL------- 265

  Fly   689 EESRLEVAIKMLSDEHSNKQEFLREASVMMRLEHKCIVRLIGIAK-GEMLMMVQELAPLGSMLQY 752
              ..:.||:|::........:..:|...:..|.|:.::||..|.. ||.:.:|.||...|::..|
Mouse   266 --GSIPVAVKVIKSADMKLADLTKEIEALKSLRHERLIRLHAICSLGEPVYIVTELMGKGNLQVY 328

  Fly   753 ILDHGHEITANAELKVWASQIACGMHYLESQHFVHRDLAARNILLTARHQAKISDFGMSRSLRPG 817
            :.....:..:...|..:|.|:|.||.|||.:..|||||||||:|:......|::|||::|.|:  
Mouse   329 LGSSEGKALSLPHLLGFACQVAEGMSYLEERRVVHRDLAARNVLVGDDLTCKVADFGLARLLK-- 391

  Fly   818 STEYQFTQGGRWPIRWYAPESFNLGIFSHASDVWSFGVTIWEMFSLGAPPYGEISNVDAIKLVDS 882
            ...|..:.|.:.|::|.|||:.|..:||..|||||||:.::|:|:.|..||..::|.:.::.:..
Mouse   392 DDVYSPSSGSKIPVKWTAPEAANYRVFSQKSDVWSFGILLYEVFTYGQCPYEGMTNHETLQQISR 456

  Fly   883 GERLPQPNLCPAYIYAVMQSCWKERPKDRPTFVYLTE 919
            |.|||:|.:|||.:|.:|..|||..|::||||..|.|
Mouse   457 GYRLPRPAVCPAEVYVLMVECWKGSPEERPTFAILRE 493

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SharkNP_524743.2 SH2_Nterm_shark_like 8..91 CDD:198210
Ank_2 <112..184 CDD:289560
ANK 117..241 CDD:238125
ANK repeat 124..151 CDD:293786
ANK repeat 153..184 CDD:293786
Ank_2 158..247 CDD:289560
ANK repeat 186..217 CDD:293786
ANK repeat 220..245 CDD:293786
Ank_4 224..274 CDD:290365
SH2_Cterm_shark_like 287..395 CDD:198211
TyrKc 662..921 CDD:197581 95/260 (37%)
PTKc_Syk_like 666..926 CDD:270650 93/256 (36%)
SrmsNP_035611.3 SH3 70..124 CDD:302595 5/23 (22%)
SH2_Srm 134..212 CDD:198223 20/99 (20%)
PTKc_Srm_Brk 238..498 CDD:133248 95/267 (36%)
STYKc 246..495 CDD:214568 95/259 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0197
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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