DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shark and spe-8

DIOPT Version :10

Sequence 1:NP_524743.2 Gene:Shark / 44353 FlyBaseID:FBgn0015295 Length:939 Species:Drosophila melanogaster
Sequence 2:NP_490680.1 Gene:spe-8 / 171606 WormBaseID:WBGene00004962 Length:512 Species:Caenorhabditis elegans


Alignment Length:282 Identity:80/282 - (28%)
Similarity:150/282 - (53%) Gaps:23/282 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   660 EKLVLDREIGHGEFGSVHSGWLLRKSGAGEESRLEVAIKMLSDEHSNKQE---FLREASVMMRLE 721
            |::.|::::|.|:||.||.|.|.....|   :.:.||:|.|...|.:..|   |||||:||:.|.
 Worm   215 EQVTLNKKLGEGQFGEVHKGSLKTSVFA---APVTVAVKTLHQNHLSANEKILFLREANVMLTLS 276

  Fly   722 HKCIVRLIGI-AKGEMLMMVQELAPLGSMLQYILDHGHEITANAELKVWASQIACGMHYLESQHF 785
            |..:::..|: ...|.:|:|.|.....|:...:|....:::|..:: ::....|||:.||..:..
 Worm   277 HPNVIKFYGVCTMKEPIMIVMEFCDGKSLEDALLSKEEKVSAEDKI-LYLFHAACGIDYLHGKQV 340

  Fly   786 VHRDLAARNILLTARHQAKISDFGMSRSLRPGSTEYQFTQGGRWPIRWYAPESFNLGIFSHASDV 850
            :|||:||||.||.::...||||||:|..    ....:..:||..|:::.|||:...|::|.|||:
 Worm   341 IHRDIAARNCLLNSKKILKISDFGLSVK----GVAIKERKGGCLPVKYMAPETLKKGLYSTASDI 401

  Fly   851 WSFGVTIWEMFSLGAPPYGEISNV--DAIKLVDSGERLPQPNLC-----PAYIYAVMQSCWKERP 908
            :|:|..::|:::.|..|: |...:  :.::....|:|:   :|.     |.:|..:.:...:...
 Worm   402 YSYGALMYEVYTDGKTPF-ETCGLRGNELRKAIIGKRI---SLAVEVELPVFIANIFEQSRQYET 462

  Fly   909 KDRPTFVYLTEFFARDPDYQNL 930
            :||.:...:.:.|..:..:..:
 Worm   463 EDRISSKQIIQIFKEEVGFHEI 484

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SharkNP_524743.2 SH2_Nterm_shark_like 8..91 CDD:198210
ANKYR <94..317 CDD:440430
ANK repeat 124..151 CDD:293786
ANK repeat 153..184 CDD:293786
ANK repeat 186..217 CDD:293786
ANK repeat 220..245 CDD:293786
SH2_Cterm_shark_like 287..395 CDD:198211
PTKc_Syk_like 666..926 CDD:270650 78/270 (29%)
spe-8NP_490680.1 SH2_Fps_family 109..195 CDD:198224
PTKc 221..476 CDD:270623 77/266 (29%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.