DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shark and Frk

DIOPT Version :9

Sequence 1:NP_524743.2 Gene:Shark / 44353 FlyBaseID:FBgn0015295 Length:939 Species:Drosophila melanogaster
Sequence 2:NP_001153016.1 Gene:Frk / 14302 MGIID:103265 Length:512 Species:Mus musculus


Alignment Length:357 Identity:113/357 - (31%)
Similarity:184/357 - (51%) Gaps:38/357 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   600 LSLLDQ-QIKAPAVARLNSLG------PNASTESEMASY-----------LHRKCSGTP-STPSA 645
            ||:||: .:|...:.||:..|      ...||.:|..:|           |.:.|.... .||..
Mouse   161 LSVLDEGVVKHYRIRRLDEGGFFLTRRKVFSTLNEFVNYYTTTSDGLCVKLEKPCLKIQVPTPFD 225

  Fly   646 TEVEAAKLRFFIEPEKLVLDREIGHGEFGSVHSG-WLLRKSGAGEESRLEVAIKMLSDEHSNKQE 709
            ...:.|. ::.|:...:.|.:.:|.|:||.|..| |         .:...||:|.|.....:..:
Mouse   226 LSYKTAD-QWEIDRNSIQLLKRLGSGQFGEVWEGLW---------NNTTPVAVKTLKPGSMDPND 280

  Fly   710 FLREASVMMRLEHKCIVRLIGIAKGE-MLMMVQELAPLGSMLQYIL-DHGHEITANAELKVWASQ 772
            |||||.:|..|.|..:::|..:...| .:.::.||...||:.:|:. |.|.:|....::.: |:|
Mouse   281 FLREAQIMKSLRHPKLIQLYAVCTLEDPIYIITELMRHGSLQEYLQNDGGSKIHLIQQVDM-AAQ 344

  Fly   773 IACGMHYLESQHFVHRDLAARNILLTARHQAKISDFGMSRSLRPGSTE-YQFTQGGRWPIRWYAP 836
            :|.||.|||||:::||||||||:|:...:..|::|||::|..:..:.: |:.....:.|::|.||
Mouse   345 VASGMAYLESQNYIHRDLAARNVLVGEHNIYKVADFGLARVFKVDNEDIYESKHEIKLPVKWTAP 409

  Fly   837 ESFNLGIFSHASDVWSFGVTIWEMFSLGAPPYGEISNVDAIKLVDSGERLPQPNLCPAYIYAVMQ 901
            |:.....||..|||||||:.::|:.:.|..||..::....|:::....|||||:.||...|::|.
Mouse   410 EAIRTNKFSIKSDVWSFGILLYEIITYGKMPYSGMTGAQVIQMLSQNYRLPQPSNCPQQFYSIML 474

  Fly   902 SCWKERPKDRPTFV----YLTEFFARDPDYQN 929
            .||...||.||||.    .|.::|..|..|.:
Mouse   475 ECWNVEPKQRPTFETLHWKLEDYFETDCSYSD 506

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SharkNP_524743.2 SH2_Nterm_shark_like 8..91 CDD:198210
Ank_2 <112..184 CDD:289560
ANK 117..241 CDD:238125
ANK repeat 124..151 CDD:293786
ANK repeat 153..184 CDD:293786
Ank_2 158..247 CDD:289560
ANK repeat 186..217 CDD:293786
ANK repeat 220..245 CDD:293786
Ank_4 224..274 CDD:290365
SH2_Cterm_shark_like 287..395 CDD:198211
TyrKc 662..921 CDD:197581 92/266 (35%)
PTKc_Syk_like 666..926 CDD:270650 93/267 (35%)
FrkNP_001153016.1 SH3_Src_like 54..111 CDD:212779
SH2_Src_Frk 119..214 CDD:199831 13/52 (25%)
PTKc_Frk_like 232..501 CDD:270653 94/279 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0197
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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