DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shark and ros1

DIOPT Version :10

Sequence 1:NP_524743.2 Gene:Shark / 44353 FlyBaseID:FBgn0015295 Length:939 Species:Drosophila melanogaster
Sequence 2:XP_031758565.1 Gene:ros1 / 101733913 XenbaseID:XB-GENE-991394 Length:2240 Species:Xenopus tropicalis


Alignment Length:1078 Identity:244/1078 - (22%)
Similarity:376/1078 - (34%) Gaps:342/1078 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 YQQAANGLPTKLTVPL----------IRDLPPHN-----TRSHGVTNLLHRATSKNESKVVFELL 140
            |...|:.:|..:.|.:          |.||...|     ..|..:..:|:     .|:.:|:.||
 Frog  1199 YSMTADWIPRHIYVAVRTEQEINHIYILDLEQKNIVLKHINSSQILTILN-----IEAILVYSLL 1258

  Fly   141 ---------KCGYRNF--DAKNQDGQTALHLAALHSDEDILK----------------------- 171
                     :.|.:.|  |.||   .|..|:....:..|..|                       
 Frog  1259 SRLYCVESTEMGKQIFYYDIKN---DTVYHVLGHGNKTDAFKTNACSCLVDSSEIGLPIALDSTN 1320

  Fly   172 ------HLLNAKVQVNSSDSFGCQ-----PLHYAARSKPASFIRTLISAQANVQGRNIDNGYVPL 225
                  :.|.....|.:||..||.     .::....||              :.|..:|:.|:..
 Frog  1321 INNPYIYFLKNSTDVWASDLEGCHCWWVISINLLPGSK--------------ITGLAVDDYYIYW 1371

  Fly   226 HEAAKHGNLEAVQELLLAEAPPLPRTSSGEFPFDLAKEAGQTAVEEF--------LLNYKLPPAN 282
            ..|.| .|....|...|.::|.|.:...|. |..|   |..|:::.|        .||...|...
 Frog  1372 STAGK-DNATIYQASKLTKSPALLQVEQGH-PQIL---AFTTSLQPFPDKCCIVLSLNQDQPKIL 1431

  Fly   283 TTRDQWYH---------------GTLTREEAVAI--LKKHAKELLAKQPEVDTSGCFLVRYSESP 330
            |..:..:.               |:.|....|..  |::|....   :..:|.|.|.:..|.|:.
 Frog  1432 TKTNTSFTLEMTQARTQCPCPLIGSTTPTYTVKYKNLREHTNSF---ENSLDNSACTIAEYQENI 1493

  Fly   331 A-ASGL--VLTLLCDQVVKNFRISQADLYQNGNKVQSGGSKFLYIDDGPYWPSVEHLIAHFMRFS 392
            | ..||  ..|.:.:..::|:                  ..||...:    |:.:.:..   :..
 Frog  1494 ADILGLQPYTTYVLEVNLRNY------------------YSFLLAQE----PAAKTVTG---KTD 1533

  Fly   393 YGLP---------------VSLKYPVPPQPKPEVPSFATIPRSNMKPKAASPATPPTPVSP---- 438
            ||:|               |::.:..|.||...|.:......|||        .||.|.||    
 Frog  1534 YGVPGAVSDITLTVWSDYAVNITWQEPAQPNGPVVAIRYQIMSNM--------LPPFPASPWRKS 1590

  Fly   439 --------------H----------SHH-----------------QHPHVPALTIT--------- 453
                          |          :.|                 |.|.||.:.:.         
 Frog  1591 DFPEGLLKSAYTGLHGGTIYKFTVLAFHPDENWFTESAAVNALTFQKPSVPKIIVPGNTSLLLEW 1655

  Fly   454 KKKQKENSSSMFNTLRLTSPKKALFDMNSLRKNKSKGKRSDSESSVSGSLAGTEQELQAA---AP 515
            |:.|::.:...|   .|.:||:..:    :..|.|..|:|....::.|........::|.   ..
 Frog  1656 KQPQEDITDFWF---ELKNPKEEWY----VPINTSCTKKSVYMCTLIGVQPNMIYSVKAVVIFTT 1713

  Fly   516 MLKSLSFSTEFSTFNADGVTGSGAAAAGEVYNVPRNNTPIEIDLPPIAQKTEAEVEYFTKSDVAI 580
            ..||.|.|.||.|  ..||.|..        .||:....| |...|:.:...:.:.|:......:
 Frog  1714 AAKSFSDSAEFKT--TAGVPGKP--------GVPQGKQNI-IQWMPVEEDNGSNIIYYILEYREL 1767

  Fly   581 ---ERERAGQWIG--NGYQPTMDVLSLLDQQIKAP---AVARLNSLG-PNASTESEMASYLHRK- 635
               :...:..|:.  ||..|.:.|...  .:||..   ..|..|.:| ...|..||...:..|| 
 Frog  1768 HDDDNNESKPWLTAYNGSCPNICVWEA--HEIKGTFEFRAAAANGIGLGEYSNTSESIIFFKRKT 1830

  Fly   636 ---------------------------------------------------------------CS 637
                                                                           |.
 Frog  1831 DVTALVAGILSGILIVLLIVAFALYWMSKQKSQKKETTAVAILEDKELMKLRGLSDAVGLANGCY 1895

  Fly   638 GTPSTPSATEVEAAKLRFFIEPEKLVLDREIGHGEFGSVHSGWLLRKSGAGEESRLEVAIKMLSD 702
            .....|  |:.|..||..| ..|||.|...:|.|.||.|:.|..:...|. |....:||:|.|..
 Frog  1896 AVSILP--TQKEKEKLPNF-PREKLTLCVFLGSGAFGEVYEGAAIDILGP-ETGIKKVAVKTLKR 1956

  Fly   703 EHSN--KQEFLREASVMMRLEHKCIVRLIGIAK-GEMLMMVQELAPLGSMLQYILDHGHEI---T 761
            :.::  |.|||:||.:|.:.:|..|::|:|:.. .|...::.||...|.:|.|:  .|..:   |
 Frog  1957 DATDHEKTEFLKEAHLMSQFDHPNILKLLGVCLFNEPQYIILELMDGGDLLTYL--RGARVDSFT 2019

  Fly   762 ANAELKVW-----ASQIACGMHYLESQHFVHRDLAARNILLTARHQ------AKISDFGMSRSLR 815
            .|..|...     :..|:.|..|||..|||||||||||.|::.:..      .||.|||::|.:.
 Frog  2020 QNPLLSTLDLLDISENISRGCAYLEKMHFVHRDLAARNCLVSVKEYNNPSRIVKIGDFGLARDIY 2084

  Fly   816 PGSTEYQFTQG-GRWPIRWYAPESFNLGIFSHASDVWSFGVTIWEMFSLGAPPYGEISNVDAIKL 879
              ..:|....| |..|:||.||||...|||:..|||||||:.:||:|::|..||...||::.:..
 Frog  2085 --KCDYYRKNGEGLLPVRWMAPESLIDGIFTCRSDVWSFGIVLWEVFTMGQQPYPGFSNLEVLHH 2147

  Fly   880 VDSGERLPQPNLCPAYIYAVMQSCWKERPKDRPTFVYL 917
            |.||:|:..|..||..:::::|.||.:.|..||.|.:|
 Frog  2148 VQSGQRMCSPTNCPDDVWSLIQKCWAQDPWKRPAFSFL 2185

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SharkNP_524743.2 SH2_Nterm_shark_like 8..91 CDD:198210 244/1078 (23%)
ANKYR <94..317 CDD:440430 55/307 (18%)
ANK repeat 124..151 CDD:293786 8/37 (22%)
ANK repeat 153..184 CDD:293786 6/59 (10%)
ANK repeat 186..217 CDD:293786 5/35 (14%)
ANK repeat 220..245 CDD:293786 6/24 (25%)
SH2_Cterm_shark_like 287..395 CDD:198211 19/127 (15%)
PTKc_Syk_like 666..926 CDD:270650 99/270 (37%)
ros1XP_031758565.1 FN3 <53..>257 CDD:442628
FN3 166..247 CDD:238020
FN3 529..631 CDD:238020
fn3 1037..1112 CDD:394996
FN3 <1477..1737 CDD:442628 57/309 (18%)
Protein Kinases, catalytic domain 1922..2190 CDD:473864 99/269 (37%)
Blue background indicates that the domain is not in the aligned region.

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