DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shark and lrit2

DIOPT Version :10

Sequence 1:NP_524743.2 Gene:Shark / 44353 FlyBaseID:FBgn0015295 Length:939 Species:Drosophila melanogaster
Sequence 2:XP_002933949.1 Gene:lrit2 / 100497156 XenbaseID:XB-GENE-923281 Length:570 Species:Xenopus tropicalis


Alignment Length:522 Identity:90/522 - (17%)
Similarity:155/522 - (29%) Gaps:183/522 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   465 FNTLRLTSPKKALFDMNSLRKNKSKGKRSDSESSVSGSLAGTEQELQAAAPMLKSLSFSTEFSTF 529
            ||.:.:.. .|:|.|:.||.:.:.:|.:                        |:|:.::....|.
 Frog    87 FNNITVMQ-MKSLEDVKSLTELRLQGNK------------------------LRSIPWTAFQDTP 126

  Fly   530 NADGVTGSGAAAAGEVYNVPRNNTPIEIDLPPIAQKTEAEVEYFTKSD---VAIERERAGQWIGN 591
            |.            ::.::..|...:   ||..|.|..|.:.|...|.   ..|.::....|  .
 Frog   127 NL------------KILDLKHNRLDV---LPEHALKFLANLTYLDLSFNQLTVISKDVFANW--P 174

  Fly   592 GYQPT------MDVLS-----------LLDQQIK---------APAVARLNSLGPNASTESEMAS 630
            .||..      .||||           ..|.::|         :|.:..:||.....|..|:...
 Frog   175 LYQKAHRSDRREDVLSNAVLALHENPWTCDCRLKGFVQFVKAVSPPIILMNSYLTCISPNSKAGK 239

  Fly   631 YLH----RKC----SGTPSTPSATEVEA-AKLRFFIEPEKLVLDREIGHGEFGSVHSGWLLRKSG 686
            :.|    :.|    ..||.:....:|.. |.|..|::...:              .|.|.  ..|
 Frog   240 FFHEIDLKSCLKPLVSTPLSNLTIQVGLNATLSCFVKASPM--------------PSIWW--TYG 288

  Fly   687 AGEESRLEVAIKMLSDEHSNKQEFLREASVMMRLEHKCI-VRLIGIAKGEMLMMVQ--ELAPLGS 748
            ........|:...:::|....:..:....|.....:||| ...:|.:...:|:.||  :|.....
 Frog   289 LKVVKAFNVSTTTINEETIKSELIIPAVHVTDAGIYKCIATNFLGNSSASILLNVQSNKLGNASP 353

  Fly   749 MLQYILDHGHEITANAELKVWASQIACGMHYLESQHFVHRDLAARNILLTARHQAKISDFGMSRS 813
            .|.|.|.....                     .||..|..||..          :|.:.:|:|  
 Frog   354 SLSYSLPPSSS---------------------SSQEHVFIDLRI----------SKQTAYGIS-- 385

  Fly   814 LRPGSTEYQFTQGGRWPIRWYAPESFNLGIFSHASDVW---SFGV---TIWEMFSLGAPPYGEIS 872
                             :.|:|       :..:..:.|   .||.   |..|:.::|...|....
 Frog   386 -----------------LEWFA-------VTENPGETWYTIYFGKYEDTQKEVINIGPGIYSYSV 426

  Fly   873 NVDAIKLVDSGERLPQPNLCPAYIYAVMQSCWKERPKDRPTFVYLTEFFARDPDYQNLPELVQTV 937
            |                :|.|...|.|..:...:.||.....|::|     ..|...|.:..:.:
 Frog   427 N----------------DLLPITKYEVCVTLKSQLPKKGQCIVFMT-----GSDISELEQREKLI 470

  Fly   938 HI 939
            ||
 Frog   471 HI 472

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SharkNP_524743.2 SH2_Nterm_shark_like 8..91 CDD:198210
ANKYR <94..317 CDD:440430
ANK repeat 124..151 CDD:293786
ANK repeat 153..184 CDD:293786
ANK repeat 186..217 CDD:293786
ANK repeat 220..245 CDD:293786
SH2_Cterm_shark_like 287..395 CDD:198211
PTKc_Syk_like 666..926 CDD:270650 43/268 (16%)
lrit2XP_002933949.1 LRR <36..>204 CDD:443914 28/158 (18%)
leucine-rich repeat 56..79 CDD:275378
leucine-rich repeat 80..103 CDD:275378 5/16 (31%)
LRR_8 103..162 CDD:404697 15/97 (15%)
leucine-rich repeat 104..127 CDD:275378 5/46 (11%)
leucine-rich repeat 128..151 CDD:275378 5/37 (14%)
leucine-rich repeat 152..165 CDD:275378 2/12 (17%)
leucine-rich repeat 176..203 CDD:275378 6/26 (23%)
LRRCT 199..249 CDD:214507 8/49 (16%)
Ig_3 251..330 CDD:464046 15/94 (16%)
fn3 373..444 CDD:394996 19/122 (16%)
Blue background indicates that the domain is not in the aligned region.

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