DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shark and srms

DIOPT Version :9

Sequence 1:NP_524743.2 Gene:Shark / 44353 FlyBaseID:FBgn0015295 Length:939 Species:Drosophila melanogaster
Sequence 2:NP_001129722.2 Gene:srms / 100192213 ZFINID:ZDB-GENE-081022-95 Length:492 Species:Danio rerio


Alignment Length:497 Identity:146/497 - (29%)
Similarity:223/497 - (44%) Gaps:115/497 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   468 LRLTSPKK-------ALFDMNSLRKNKSKGKRSDSES------------SVSGSLAGTEQELQAA 513
            :|:.:|||       ||||..:..:.:...|..|..|            .::|||   |..|..|
Zfish    40 IRVPAPKKKPAQLYAALFDFVARSEEELSVKEGDKLSVIEKRGDYVFAKKLTGSL---ESGLIPA 101

  Fly   514 --APMLKSLSFSTEFSTF-----------------NADGVTGSGAAAAGEVYNVPRNNTPIEIDL 559
              ..:||.     ||:.:                 :::..|||......|.::          |.
Zfish   102 NYVALLKD-----EFANYKWYYGNINRQKAEKLLLSSENKTGSFLVRISESHS----------DE 151

  Fly   560 PPIAQKTEAEVEYFTKSDVAIERERAGQW-----IGNGYQPTMDVLSLLDQQIKAPAVARLNSLG 619
            ..|:.::|..|.:|     .|.|...|.:     |..|   |:|.|....||       ...|||
Zfish   152 YTISARSENSVFHF-----RIHRSPIGAYFVSEKISFG---TLDELIRYYQQ-------NSRSLG 201

  Fly   620 PNASTESEMASYLHRKCSGTPSTPSATEVEAAKLRFFIEP-----EKLVLDREIGHGEFGSVHSG 679
                      .::.:.|           |:..:| |.:||     |:.:|.:::|.|.||.|...
Zfish   202 ----------CHIDQPC-----------VQRREL-FDMEPWERPREEFMLVKKLGEGHFGEVWEA 244

  Fly   680 -WLLRKSGAGEESRLEVAIKMLSDEHSNKQEFLREASVMMRLEHKCIVRLIGI-AKGEMLMMVQE 742
             |..:|.        :||||||..|.:...||::|...:..|.|..::.|:.: ::||.:.:|.|
Zfish   245 IWKTQKK--------KVAIKMLKQEDTKLDEFVKEVHALKNLHHPKLIELLALCSRGEPVYIVTE 301

  Fly   743 LAPLGSMLQYILDHGHEITANAELKVWASQIACGMHYLESQHFVHRDLAARNILLTARHQAKISD 807
            |...||:..|:.....::..:|.|...|:|||.||.|||.:|.|||||||||||:......|::|
Zfish   302 LMAKGSLKSYLSSAEGQLLTSAHLIYMAAQIAEGMAYLEDRHIVHRDLAARNILVGNDLVCKVAD 366

  Fly   808 FGMSRSLRPGSTEYQFTQGGRWPIRWYAPESFNLGIFSHASDVWSFGVTIWEMFSLGAPPYGEIS 872
            ||::|.::  .:.:..::..:.|:||.|||:.....||..||||||||.::||.|.|..||...:
Zfish   367 FGLARIIK--DSVFTASKTTKIPVRWTAPEAALYQRFSVKSDVWSFGVLLYEMMSRGKMPYDGKT 429

  Fly   873 NVDAIKLVDSGERLPQPNLCPAYIYAVMQSCWKERPKDRPTF 914
            |.:.::.:.||.||..||.||..||.:|..||......||:|
Zfish   430 NKEVMEALSSGYRLACPNHCPPNIYRIMLECWNNEASKRPSF 471

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SharkNP_524743.2 SH2_Nterm_shark_like 8..91 CDD:198210
Ank_2 <112..184 CDD:289560
ANK 117..241 CDD:238125
ANK repeat 124..151 CDD:293786
ANK repeat 153..184 CDD:293786
Ank_2 158..247 CDD:289560
ANK repeat 186..217 CDD:293786
ANK repeat 220..245 CDD:293786
Ank_4 224..274 CDD:290365
SH2_Cterm_shark_like 287..395 CDD:198211
TyrKc 662..921 CDD:197581 96/255 (38%)
PTKc_Syk_like 666..926 CDD:270650 95/251 (38%)
srmsNP_001129722.2 SH3 52..106 CDD:302595 13/56 (23%)
SH2 114..197 CDD:214585 19/107 (18%)
PKc_like 220..481 CDD:304357 97/262 (37%)
STYKc 229..478 CDD:214568 96/253 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0197
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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