DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment imd and imd

DIOPT Version :10

Sequence 1:NP_573394.1 Gene:imd / 44339 FlyBaseID:FBgn0013983 Length:273 Species:Drosophila melanogaster
Sequence 2:XP_001688608.2 Gene:imd / 3289876 VectorBaseID:AGAMI1_013902 Length:279 Species:Anopheles gambiae


Alignment Length:307 Identity:95/307 - (30%)
Similarity:129/307 - (42%) Gaps:75/307 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSKLRNLLPTIFGGKEAQNPTPVEGRLEKDAAPV----------DDNEPDNNNSGALA------- 48
            |.|..||:.|:|....|       .:||.||||:          |:.....|...|.|       
Mosquito     1 MVKFSNLIGTLFSKSAA-------SKLETDAAPLPPRRKADAYGDETMAHTNTPAAAAATQNGNF 58

  Fly    49 ---------LPSTAGTPTASSDLTESVLRELSDPNYNSMDVVHSANIPGTLSNVQTNNTM----- 99
                     :.:.|..|..||...|.|..|            |....|.|:.|...:||:     
Mosquito    59 PNGVQVVPGMENLALVPGGSSQSLEPVAGE------------HHTATPQTVVNNVQHNTLTAPQT 111

  Fly   100 NVHSAQQQVVMNFSNANNLHFGSVYNFNQNLSACSSRKGSTSTAEESVASPDGKPRASAT----- 159
            ::.:.....|....||:|||.|:.|.||           :.:..:|..::....|.|.:.     
Mosquito   112 SISNTTGMQVYQIRNASNLHIGNSYTFN-----------TAAVVDEGASTSGSLPGAGSAVKWAN 165

  Fly   160 -RKTVSIVAMMQSQEEPDVRLLDVVSTHLGEGWKQVMRDLGMSEGQIDQAIIDHQMHGNIREVIY 223
             |.:.:|..|||||:|.|..|||.||.|||..||...|.|..||||||....|   :..:.|.||
Mosquito   166 LRLSNTISQMMQSQDEVDTELLDTVSRHLGYEWKSFARRLEYSEGQIDAFEAD---NSTLAEQIY 227

  Fly   224 QLLLQWIRSSADGVATVGRLTTLLWESQHRDCVQRMKLVWKALEKRK 270
            ..:|.|.|:..|  .|:|||.||||.::|::.|..:|.|||   |||
Mosquito   228 SFMLDWTRNDDD--PTLGRLVTLLWNNKHKETVYYIKQVWK---KRK 269

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
imdNP_573394.1 Death 180..260 CDD:260017 35/79 (44%)
imdXP_001688608.2 None

Return to query results.
Submit another query.