DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pie and kmt2ba

DIOPT Version :9

Sequence 1:NP_001260348.1 Gene:pie / 44315 FlyBaseID:FBgn0005683 Length:582 Species:Drosophila melanogaster
Sequence 2:XP_689347.5 Gene:kmt2ba / 560856 ZFINID:ZDB-GENE-060503-376 Length:2863 Species:Danio rerio


Alignment Length:559 Identity:123/559 - (22%)
Similarity:177/559 - (31%) Gaps:169/559 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 ELQCLIC------KYSDTDDLVF---GEWMIVRNLQVHYFCLLLSTHLPQRGGDSSGILGFLLRD 61
            |.||.:|      |.:|...|::   .||       .|..|.:.|..:.:..|        .|..
Zfish  1386 ERQCSLCQQHGDAKPNDAGRLLYIGQNEW-------AHVNCCIWSAEVQETNG--------ALLH 1435

  Fly    62 IREEAAAAEKRKCWYCNKIGASLQC--DRCRSLFHLKCGLENRAVFEFCGQYKSYCYKCRPMDDY 124
            :....|.....:|..|.:.||::.|  ..|:|.:|..|...:..||:.  ..|.||||.|.:.:.
Zfish  1436 VHSAVARGRFMRCERCGQTGATVGCCLTSCQSNYHFMCARASNCVFQH--DKKVYCYKHRELINS 1498

  Fly   125 KRQLQSNPPRNATCPICFSSIYKVELHCVVYGDCCRLGFAHKKCMRQYALTSGYYLRCIWCRSER 189
            |.: |.|                              ||  :...|.|....|..||      .:
Zfish  1499 KIE-QGN------------------------------GF--EVVRRVYVDFDGISLR------RK 1524

  Fly   190 FRDSIRLQSVFVPDRDATWEKQRNAYRELHERNL-----KCDQPNCLCPSGRTYNRLSW-VILCC 248
            |...:..:||.|            ....||.:||     .......|.|.|...:|..| .:...
Zfish  1525 FLTGLEPESVNV------------MIGSLHVKNLGVLTELSANSGKLYPVGYQCSRWYWSTVDPR 1577

  Fly   249 SSCAATSAHLKCLVGALRLPKKRERTDFKCSMCLD--VERRIAEGPARTTEETNADGDN------ 305
            ..|..|     |.|..:| |..|.||.   |..:|  ....|...|....:|...|.::      
Zfish  1578 RRCRYT-----CKVSEVR-PSTRCRTP---SFMVDQGENHTIVHSPKAQNDEDGTDSESFSPGLP 1633

  Fly   306 --------QVDGS-----FYVQKLGPDAATRSLTQTP-----------VFSEEDESERSSNITVI 346
                    |..||     .|.....|.........:|           ..|:.||:.||:     
Zfish  1634 LSTPSKTKQDSGSGGRTPGYPHSRRPAGGMSRPLPSPGNALSTSHHILTISDLDETRRST----- 1693

  Fly   347 FSQPKSNATSERLSLSPPQEEMIVEIP---------------DSPEASPKTSIDENHSPQPIARR 396
                :.::|..|.:..||   :|:..|               .||..||..:.:...|.....||
Zfish  1694 ----RRHSTRSRNASPPP---VILSGPMALRSGGSINPRSLSFSPPVSPLGATENLMSTTSPRRR 1751

  Fly   397 DTSDSPQPIAASEIPDSPQPTAASEIPDLPQTTAINVNPELTQQTALNTIPHSPQPEASFSTQLV 461
            ....|..|.:....|..||....|....||.|  ::.:|.|  |....|.||        .|..|
Zfish  1752 GRPPSLSPSSIISGPSPPQAALRSPSSALPST--VHHSPRL--QQPFTTSPH--------KTDKV 1804

  Fly   462 SQTFDCPQPQEQA---VAKAPNSPSLPKEDPNTLLVLKS 497
            .|.| ..:|:|.|   |.|:.:....|..||:|.:.:.|
Zfish  1805 VQDF-LSEPEEAAGAPVLKSDHDLLSPHFDPDTDVAVAS 1842

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pieNP_001260348.1 PHD_SF 9..117 CDD:304600 27/118 (23%)
PHD_SF 224..>260 CDD:304600 7/36 (19%)
PARM 318..>491 CDD:293666 47/201 (23%)
kmt2baXP_689347.5 zf-CXXC 780..823 CDD:251032
PHD_SF 1016..1062 CDD:304600
PHD_SF 1064..1112 CDD:304600
PHD_SF 1149..1206 CDD:304600
Bromo_ALL-1 1187..1334 CDD:99925
PHD_SF 1389..1492 CDD:304600 28/119 (24%)
FYRN 1540..1586 CDD:283589 12/50 (24%)
FYRC 2561..2646 CDD:295414
SET <2677..2863 CDD:225491
SET 2725..2845 CDD:214614
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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