DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pie and G2e3

DIOPT Version :9

Sequence 1:NP_001260348.1 Gene:pie / 44315 FlyBaseID:FBgn0005683 Length:582 Species:Drosophila melanogaster
Sequence 2:NP_001100196.1 Gene:G2e3 / 299002 RGDID:1310263 Length:717 Species:Rattus norvegicus


Alignment Length:612 Identity:155/612 - (25%)
Similarity:261/612 - (42%) Gaps:119/612 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MEDNK-----ELQCLICKYSDTDDLVFGE------WMIVRNLQVHYFCLLLSTHLPQRGGDSSGI 54
            |.:||     .|.|:.|:.:|.....:||      |    |..|||:|||:|:.:.|||.:..|:
  Rat     1 MNENKPGNSQSLACVFCRKNDDCPNKYGEKKTCEKW----NFSVHYYCLLMSSGIWQRGKEEEGV 61

  Fly    55 LGFLLRDIREEAAAAEKRKCWYCNKIGASLQC--DRCRSLFHLKCGLENRAVFEFCGQYKSYCYK 117
            .|||:.|||:|...|.|.||..|.|.|||:.|  .:|:..:||.|||:...:|:|...:.|:|:|
  Rat    62 YGFLIEDIRKEVNRASKLKCTVCKKNGASIGCVVPQCKRSYHLPCGLQKECIFQFTDNFASFCWK 126

  Fly   118 CRPMDDYKRQLQSNPPRNA-TCPICFSSIYKVELHCVVYGDCCRLGFAHKKCMRQYALTSG-YYL 180
            .||:    :.:.||..|:: .|.||...:..:..:.::...||:..:.|:.|::..|:.:| ::.
  Rat   127 HRPV----QAITSNKYRDSLPCTICLEFVEPIPTYNILQSPCCKNAWFHRDCLQVQAINAGVFFF 187

  Fly   181 RCIWC-RSERFRDSIRLQSVFVPDRDATWEKQRNAYRELHERNLKCDQPNCLCPSGRTYN--RLS 242
            ||..| .::.|:..:....:.:|::||:||.:.|||:||.:.:.:||...|.|..||.||  ...
  Rat   188 RCTLCNNTDIFQKEMLRMGIHIPEKDASWELEENAYQELLQSHDRCDVRRCHCKEGREYNEPNSK 252

  Fly   243 WVILCCSSCAATSAHLKCLVGALRLPKKRERTDFKCSMCLDVERRIAEGPARTTEETNADGDNQV 307
            |.|..|..|.::..||.|  .:|:..:|    :::|..|    ||||                 .
  Rat   253 WEIKRCQCCGSSGTHLAC--SSLQSWEK----NWECLDC----RRIA-----------------Y 290

  Fly   308 DGSFYVQKLGPDAATRSLTQTPVFSEEDESERSSNITVIFSQPKS---NATSERLSLSPPQEEMI 369
            ...|......|.|.:.::|.|....||...:.....||  :|.|.   ..:..|..:|    .::
  Rat   291 TSDFQKAPKHPLANSTNVTVTDCLLEESSPKLPRQSTV--AQQKELLRQGSKFRRDIS----TIL 349

  Fly   370 VEIPDSPEASPKT-SIDENHSPQPIARRDTSDSPQPIAASEIPDSPQPTAASEIPDLPQTTAINV 433
            :|:....:...|| .|::.:..:....:..|....|..:.|:                  ..:|.
  Rat   350 IELGFQIKKKAKTLYINKANVWRSAVEQFQSQKFNPSYSIEV------------------VYVND 396

  Fly   434 NPEL------TQQTALNTIPHSPQPEASFSTQLVSQTFDCPQPQEQAVAKAPNSPSLPKEDPNTL 492
            |.|:      ::|..|:.:.|..:..:.|...|....    ....|||.:     :|..|....|
  Rat   397 NDEVGSKHPGSKQEFLSHLMHHLENSSVFEGSLAKNL----SLNSQAVKE-----NLYYEAGKML 452

  Fly   493 LV-LKSGFQCPGEPFFYLVIYEFEHGTCMGECIGTCVLRFKEDD-PRIQDTSQAALERVNITPDD 555
            .: |..|...||  ||             .|.:..|:....|:. |.:.|.|...:.::.|..| 
  Rat   453 AISLVHGGPSPG--FF-------------SETLFKCLAYGPENALPTLDDVSDLDVAQIIIKID- 501

  Fly   556 VWCRSEDRGIFEHIEKFHEWYRSEGFS 582
               .:.|..|.:.:  .:|:|....||
  Rat   502 ---TAADLNILKSV--INEYYNYLEFS 523

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pieNP_001260348.1 PHD_SF 9..117 CDD:304600 45/115 (39%)
PHD_SF 224..>260 CDD:304600 14/37 (38%)
PARM 318..>491 CDD:293666 32/182 (18%)
G2e3NP_001100196.1 ePHD_PHF7_G2E3_like 14..127 CDD:277139 45/116 (39%)
PHD_PHF7_G2E3_like 232..285 CDD:276971 18/58 (31%)
HECTc 365..688 CDD:421431 38/207 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166335113
Domainoid 1 1.000 93 1.000 Domainoid score I7367
eggNOG 1 0.900 - - E2759_KOG1084
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D110264at33208
OrthoFinder 1 1.000 - - FOG0003998
OrthoInspector 1 1.000 - - otm45386
orthoMCL 1 0.900 - - OOG6_106451
Panther 1 1.100 - - O PTHR12420
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3283
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1110.750

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