DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Idh and idh2

DIOPT Version :9

Sequence 1:NP_001137910.2 Gene:Idh / 44291 FlyBaseID:FBgn0001248 Length:479 Species:Drosophila melanogaster
Sequence 2:NP_001004799.1 Gene:idh2 / 448026 XenbaseID:XB-GENE-976315 Length:455 Species:Xenopus tropicalis


Alignment Length:440 Identity:272/440 - (61%)
Similarity:334/440 - (75%) Gaps:15/440 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 SAVSEHSSVVC---SPEQMAQ-------KIK-AGPVVDVLGDEMTRIIWDSIKSQLILPFLDIEL 102
            :|:.::..|:.   |.:|:.|       :|| |.|||::.|||||||||:.||.:|||..:|:||
 Frog    17 AALGKNPGVLAPALSQQQLQQQRNYADKRIKVANPVVEMDGDEMTRIIWEFIKEKLILSNVDVEL 81

  Fly   103 HTYDLGIENRDKTEDQVTIDCAEAIKKYNVGIKCATITPDEKRVEEFNLKKMWKSPNGTIRNILG 167
            ..:|||:..||:|.||||||.|.|..||||.:|||||||||.|||||.|||||||||||||||||
 Frog    82 KYFDLGLPYRDQTNDQVTIDSALATLKYNVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILG 146

  Fly   168 GTVFREAIICKNVPRLVTGWQKPIVIGRHAHADQYKAVDYVVPGPGKLTLTWKGTDGQVID--EV 230
            |||||:.|||||:||||.||.:.|.||||||.|||||.|:||...|...|.:...:|....  ||
 Frog   147 GTVFRDPIICKNIPRLVPGWTQAITIGRHAHGDQYKATDFVVDQAGTFKLVFAPANGTATKEWEV 211

  Fly   231 INDFKGPGIALGMFNTDDSIVDFAHASFKYALDRKLPLYMSTKNTILKKYDGRFKDIFEDLYNKQ 295
            .| |...|:.:||:|||:||..|||:.|:|::.:|.|||:||||||||.|||||||||:|::.|.
 Frog   212 FN-FPAGGVGMGMYNTDESISGFAHSCFQYSIQKKWPLYLSTKNTILKAYDGRFKDIFQDIFEKH 275

  Fly   296 YKKEYEAAGIWYEHRLIDDMVAYAMKSEGGFVWACKNYDGDVQSDSVAQGYGSLGLMTSVLLCPD 360
            ||.|::...|||||||||||||..:||.|||||||||||||||||.:|||:||||||||||:|||
 Frog   276 YKPEFDKLKIWYEHRLIDDMVAQVLKSTGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPD 340

  Fly   361 GKTVEAEAAHGTVTRHFRFYQQGKETSTNPIASIFAWTRGLLHRAKLDNNEPLKQFADTLEQVCI 425
            |||:||||||||||||:|.:|:|:.||||||||||||||||.||.|||.|:.|..|:.|||:||:
 Frog   341 GKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLINFSLTLEKVCV 405

  Fly   426 DTIESGAMTKDLAICIKGNINAVTRRD-YQETFEFINTLAKNLEGALAKN 474
            :|:|||.||||||.||.|.::.|...: |..|.:|::.:..||:.||.||
 Frog   406 ETVESGIMTKDLAGCIHGGMSNVRLNEHYVNTTDFLDAIKNNLDKALGKN 455

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
IdhNP_001137910.2 PTZ00435 63..474 CDD:240417 267/421 (63%)
idh2NP_001004799.1 PTZ00435 41..455 CDD:240417 265/414 (64%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D248894at33208
OrthoFinder 1 1.000 - - FOG0001185
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5145
SonicParanoid 1 1.000 - - X809
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.040

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