DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment arr and nid2b

DIOPT Version :9

Sequence 1:NP_524737.2 Gene:arr / 44279 FlyBaseID:FBgn0000119 Length:1678 Species:Drosophila melanogaster
Sequence 2:XP_021324205.1 Gene:nid2b / 570436 ZFINID:ZDB-GENE-040724-143 Length:1166 Species:Danio rerio


Alignment Length:363 Identity:115/363 - (31%)
Similarity:163/363 - (44%) Gaps:61/363 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   340 PKAPNSVRAW----------DPSLQPYEDNPCAHNN-------GNCSHLCLLATNSQGFSCACPT 387
            |:.......|          .||.|.|.....||.|       || |..|.         |....
Zfish   809 PRVETVCERWRLALMSHYNGQPSSQDYMPLCDAHGNFQPVQCYGN-SAFCW---------CVDRH 863

  Fly   388 GVKLISANT-------CANG-----SQEMMFIV-------------QRTQISKISLDSPD----- 422
            ||::|...:       |.:|     :..:|:.|             |.:||..|.|:..|     
Zfish   864 GVEIIGTRSNEDVKPPCISGDAAPLNNALMYPVISSSPSGPAILYTQASQIGVIPLEETDPVQEK 928

  Fly   423 YTIFPLPLGKVKYAIAIDYDPVEEHIYWSDVETYTIKRA-HADGTGVTDFVTSEVRHPDGLALDW 486
            .|:. |.| :....|.||||..|..:||:|...:||.|| ...|:.....::.::..|:|:|:|.
Zfish   929 STVL-LAL-QDSVVIGIDYDCQENILYWTDFGRHTIYRAVLISGSEPEAVISKDLIQPEGIAVDS 991

  Fly   487 LARNLYWTDTVTDRIEVCRLDGTARKVLIYEHLEEPRAIAVAPSLGWMFWSDWNERKPKVERASL 551
            :.|.|:|.|:..|:||...|||:.|:|||...|..||||.|....|.:||:|||...||:|.:||
Zfish   992 VHRMLFWADSGKDKIETSGLDGSKRRVLIDSGLVNPRAIIVDAKSGTVFWTDWNRDAPKIESSSL 1056

  Fly   552 DGSERVVLVSENLGWPNGIALDIEAKAIYWCDGKTDKIEVANMDGSGRRVVISDNLKHLFGLSIL 616
            :|..|.|||...|..||.:..|.....:.|.|..|.|:|..:.||:.|| |..|.|.:.|.|:|.
Zfish  1057 EGRNRKVLVQVGLMLPNALTWDNATNQLCWADAGTKKLECISPDGTQRR-VFQDTLNYPFSLAIH 1120

  Fly   617 DDYLYWTDWQRRSIDRAHKITGNNRIVVVDQYPDLMGL 654
            :.:.|:|||:|..|....:.||.|...:..|...|.|:
Zfish  1121 NKHFYYTDWERDGILVIDQSTGKNTDYLPIQQSHLYGI 1158

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
arrNP_524737.2 LY 162..201 CDD:214531
NHL 168..503 CDD:302697 54/210 (26%)
NHL repeat 172..237 CDD:271320
LY 252..293 CDD:214531
NHL repeat 261..298 CDD:271320
NHL repeat 303..339 CDD:271320
NHL repeat 341..419 CDD:271320 24/119 (20%)
NHL repeat 428..476 CDD:271320 16/48 (33%)
LY 472..511 CDD:214531 14/38 (37%)
NHL repeat 477..503 CDD:271320 10/25 (40%)
Ldl_recept_b 534..573 CDD:278487 18/38 (47%)
LY 558..599 CDD:214531 14/40 (35%)
LY 600..641 CDD:214531 15/40 (38%)
FXa_inhibition 668..703 CDD:291342
LY 739..773 CDD:214531
LY 776..818 CDD:214531
LY 819..860 CDD:214531
FXa_inhibition 973..1010 CDD:291342
LY 1122..1164 CDD:214531
FXa_inhibition 1273..1313 CDD:291342
LDLa 1319..1362 CDD:238060
LDLa 1365..1399 CDD:238060
LDLa 1399..1433 CDD:197566
nid2bXP_021324205.1 NIDO 97..254 CDD:322035
nidG2 359..581 CDD:238158
EGF_3 594..630 CDD:315598
EGF_CA 632..665 CDD:214542
cEGF 655..678 CDD:315355
EGF_3 684..712 CDD:315598
Thyroglobulin_1 735..798 CDD:306570
TY 815..880 CDD:238114 16/74 (22%)
LY 931..965 CDD:214531 13/35 (37%)
LY 974..1016 CDD:214531 14/41 (34%)
LY 1017..1061 CDD:214531 21/43 (49%)
LY 1062..1104 CDD:214531 14/41 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170590470
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.930

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