Sequence 1: | NP_524737.2 | Gene: | arr / 44279 | FlyBaseID: | FBgn0000119 | Length: | 1678 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_005155618.1 | Gene: | vldlr / 393897 | ZFINID: | ZDB-GENE-040426-803 | Length: | 877 | Species: | Danio rerio |
Alignment Length: | 473 | Identity: | 137/473 - (28%) |
---|---|---|---|
Similarity: | 220/473 - (46%) | Gaps: | 91/473 - (19%) |
- Green bases have known domain annotations that are detailed below.
Fly 335 ELIDTPKAPNSVR---AW-DPSLQPYEDNPCAHNNGNCSHLCLLATNSQGFSCACPTGVKLISAN 395
Fly 396 TC-----------------------------------------ANGSQEMMFIVQRTQISKISLD 419
Fly 420 SPDYTIFPLPLGKVKYAIAIDYDPVEEHIYWSDVETYTI--------KRAHADGTGVTDFVTSEV 476
Fly 477 RHPDGLALDWLARNLYWTDTVTDRIEVCRLDGTARKVLIYEHLEEPRAIAVAPSLGWMFWSDWNE 541
Fly 542 RKPKVERASLDGSERVVLVSENLGWPNGIALDIEAKAIYWCDGKTDKIEVANMDGSGRRVVIS-- 604
Fly 605 DNLKHLFGLSILDDYLYWTDWQRRSIDRAHKITGNNRIVVVDQYPDLMGLKV-TRLREVRGQNAC 668
Fly 669 --AVRNGGCSHLCLNRPR------DYVCRCAIDYELANDKRTCVVPAAFL-------LFSRQEH- 717
Fly 718 ----IGRISIE--YNEGN 729 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
arr | NP_524737.2 | LY | 162..201 | CDD:214531 | |
NHL | 168..503 | CDD:302697 | 55/220 (25%) | ||
NHL repeat | 172..237 | CDD:271320 | |||
LY | 252..293 | CDD:214531 | |||
NHL repeat | 261..298 | CDD:271320 | |||
NHL repeat | 303..339 | CDD:271320 | 2/3 (67%) | ||
NHL repeat | 341..419 | CDD:271320 | 30/122 (25%) | ||
NHL repeat | 428..476 | CDD:271320 | 9/55 (16%) | ||
LY | 472..511 | CDD:214531 | 15/38 (39%) | ||
NHL repeat | 477..503 | CDD:271320 | 10/25 (40%) | ||
Ldl_recept_b | 534..573 | CDD:278487 | 17/38 (45%) | ||
LY | 558..599 | CDD:214531 | 15/40 (38%) | ||
LY | 600..641 | CDD:214531 | 16/42 (38%) | ||
FXa_inhibition | 668..703 | CDD:291342 | 15/42 (36%) | ||
LY | 739..773 | CDD:214531 | |||
LY | 776..818 | CDD:214531 | |||
LY | 819..860 | CDD:214531 | |||
FXa_inhibition | 973..1010 | CDD:291342 | |||
LY | 1122..1164 | CDD:214531 | |||
FXa_inhibition | 1273..1313 | CDD:291342 | |||
LDLa | 1319..1362 | CDD:238060 | |||
LDLa | 1365..1399 | CDD:238060 | |||
LDLa | 1399..1433 | CDD:197566 | |||
vldlr | XP_005155618.1 | LDLa | 29..63 | CDD:238060 | |
LDLa | 67..99 | CDD:197566 | |||
Ldl_recept_a | 107..145 | CDD:278486 | |||
Ldl_recept_a | 149..184 | CDD:278486 | |||
Ldl_recept_a | 234..269 | CDD:278486 | |||
Ldl_recept_a | 272..308 | CDD:278486 | |||
LDLa | 316..346 | CDD:238060 | 7/19 (37%) | ||
FXa_inhibition | 356..390 | CDD:291342 | 16/35 (46%) | ||
EGF_CA | 392..426 | CDD:214542 | 0/33 (0%) | ||
NHL | 479..>570 | CDD:302697 | 32/97 (33%) | ||
LY | 504..541 | CDD:214531 | 13/36 (36%) | ||
NHL repeat | 511..551 | CDD:271320 | 16/39 (41%) | ||
Ldl_recept_b | 564..604 | CDD:278487 | 18/40 (45%) | ||
LY | 588..630 | CDD:214531 | 15/41 (37%) | ||
Ldl_recept_b | 651..690 | CDD:278487 | 9/38 (24%) | ||
FXa_inhibition | 707..745 | CDD:291342 | 14/37 (38%) | ||
Mucin | <723..817 | CDD:250634 | 14/63 (22%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C170590471 | |
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG1215 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
ZFIN | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.830 |