DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment arr and Sspo

DIOPT Version :9

Sequence 1:NP_524737.2 Gene:arr / 44279 FlyBaseID:FBgn0000119 Length:1678 Species:Drosophila melanogaster
Sequence 2:XP_017177063.1 Gene:Sspo / 243369 MGIID:2674311 Length:5197 Species:Mus musculus


Alignment Length:1234 Identity:239/1234 - (19%)
Similarity:354/1234 - (28%) Gaps:516/1234 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   744 HALDVSVAERRIYWTDQKSKCIFRAFLNGSYVQ-----------RIVDSGLIGPDGIAVDWLANN 797
            |||.|                    ||..:::|           ..||...||.:|..:.|.::.
Mouse   657 HALSV--------------------FLGNTHIQLRYSGAVLVDGEDVDLPWIGVEGFNISWASST 701

  Fly   798 ---IYWSDAEARRIEVARLDGSSRRVLLWKGVEEPRS-LVLEPRRGYMY------WTESPTDSIR 852
               ::|..|                .:|| ||.||.: :.|:||..|..      :|....|...
Mouse   702 FLLLHWPGA----------------WVLW-GVAEPAAYITLDPRHAYQVQGLCGTFTWKQQDDFL 749

  Fly   853 RAAMDGSDLQTIVAG-----------------------ANHAAGLTFDQETRRLYWATQSRPAKI 894
            ..|   .|::|.|..                       ::::..|||          |::..|.:
Mouse   750 TPA---GDIETSVTAFASKFQVSGDGRCPLVDKSPLFCSSYSQHLTF----------TEAACAIL 801

  Fly   895 ESADWDGKKRQILVGSDMDEPYAVSLYQDYVYWSDWNTGDIERV-----------HKTTGQNRSL 948
            .     |...|...|....||:.:..              :|.|           ...:...|..
Mouse   802 H-----GHAFQECHGLVDREPFRLRC--------------LEAVCGCAPGRDCLCPVLSAYTRHC 847

  Fly   949 VHSGMTYITSLLVFNDKRQTGVNPCKVNNGG----------CSHLCLAQP------GRRGMTCAC 997
            ...|:     ||.:.::     ..|.|:..|          |.|.| .:|      |.....|.|
Mouse   848 AQEGV-----LLQWRNE-----TLCPVSCPGGQVYQECAPVCGHHC-GEPEDCKELGICVAGCNC 901

  Fly   998 PTHYQLAKDGVSCIPPRNYIIFSQRNC-FG--RLLPNTTD------------------------- 1034
            |.......:| .|:||      |..:| ||  |...|||.                         
Mouse   902 PPGLLWDLEG-QCVPP------SMCHCQFGGHRYTINTTTVRDCSHCICQERGLWNCTAHHCPRQ 959

  Fly  1035 ---CPNIPLPVSGKNIRAVDYDPITHHIYWIEGR-------------SHSIKRSLA----NG--- 1076
               ||...:.|.|..:...| .|..:|..|....             .|.:...|.    ||   
Mouse   960 WALCPRELIYVPGACLLTCD-SPRANHSCWAGSTDGCVCPPGTVLLDKHCVSPDLCPCRHNGQWY 1023

  Fly  1077 -------TKVSLLANSGQPFDLAIDIIGRLLFWTCSQSNSINVTSFLGESVGVIDTGDSEKPRNI 1134
                   ...::....||.:...    |:.....|..|.:.:..:|.|                 
Mouse  1024 PPNATIQEDCNICVCQGQRWHCT----GQRCSGWCQASGAPHYVTFDG----------------- 1067

  Fly  1135 AVHAMKRLLFWTDVGSHQAIIRARVDGNERV---ELAYKLEGVT---ALALDQQSDMIYYAHGKR 1193
                    |.:|..|:.:.::.....|...|   .|.....|:|   ||.:...|.:::...|: 
Mouse  1068 --------LVFTFPGACEYLLVREAGGRFSVSVQNLPCGASGLTCTKALVVRLDSTVVHMLRGQ- 1123

  Fly  1194 IDAIDINGKNKKTLVSMHISQVINIAAL----GGFVYWLDDKTGVERITVNGERRSAELQ----- 1249
              |:.:||      ||:.:.:|.....|    .|....|..:.|:..:...|.|...:|.     
Mouse  1124 --AVTVNG------VSIRLPKVYTGPGLSLHHAGLFLLLTTRLGLTLLWDGGTRVLVQLSPHFHG 1180

  Fly  1250 RLPQI---------TDIRA--------------VW-----------TPDPKVLRNHTCMHSRTKC 1280
            |:..:         .|:|:              .|           .|.|..:..|....:|.:|
Mouse  1181 RVAGLCGNFDSDASNDLRSRQGVLEPTAELTAHSWRLNPLCPEPGDLPHPCTVNAHRANWARARC 1245

  Fly  1281 SHI---------------------------CIASGE------GIA---------------RTRDV 1297
            ..|                           |...|:      .||               |::::
Mouse  1246 EVILQPIFAPCHTEVPPQQYYEWCVYDACGCDTGGDCECLCSAIATYADECARHRHHVRWRSQEL 1310

  Fly  1298 C---------------SCPK-----------HLMLLEDKENC----------GA----------- 1315
            |               :||.           |..::...|.|          ||           
Mouse  1311 CPLQCEGGQVYEPCGSTCPPTCHDHHSELRWHCQVITCVEGCFCPEGTLLHGGACMKLAACPCEW 1375

  Fly  1316 ----FPA-------CGPDHFTC----------AAPVSGISD----------VNKDCIPASWRCDG 1349
                ||.       ||  :.||          .||...:..          .|..|:|..|.||.
Mouse  1376 QGSFFPPGTVLQKDCG--NCTCQGSQWHCDRGGAPCEDMEPGCAEGETLCRENGHCVPLEWLCDN 1438

  Fly  1350 QKDCPDKSDEVGCPT--CRADQFSCQSGECIDKSLVCDGTTNCANGHDEADCCKRPGEFQCPINK 1412
            |.||.|.|||.||.|  |...|.|||||.|:..||:|||..:|.:|.||..|....|...|...:
Mouse  1439 QDDCGDGSDEEGCATSVCGEGQMSCQSGHCLPLSLICDGQDDCGDGTDEQGCLCPHGSLACADGR 1503

  Fly  1413 LCISAALLCDGWENCADGADESSDICLQRRMAPATDKRAFMILIGATMITIFSIVYLLQFCRTRI 1477
             |:..||||:|..:|.|.|||.|  ||    .|.:      .:.|.......:.|..:|.|.   
Mouse  1504 -CLPPALLCNGHPDCLDAADEES--CL----GPVS------CISGEVSCVDGTCVRTIQLCD--- 1552

  Fly  1478 GKSRTEPKDDQA----------TDP----LSPSTLSKSQRVSKIASVADAVRMSTLNSR-NSMNS 1527
            |........|:.          |.|    .:|||.|.....|.:.|.:.|...|.|..: ||...
Mouse  1553 GVWDCPDGADEGPSHCSLPSLPTPPGGIGQNPSTSSLDTAPSPVGSTSPASPCSLLEFQCNSGEC 1617

  Fly  1528 YDRNHITGASSSTTNGSS-------MVAYPINPPPSPATRSRRPYRHYKIINQPPPPTPCSTDIC 1585
            ..|..........|:||.       .:.|.:....||...|  |.:....:.|.|..:....|:|
Mouse  1618 TPRGWRCDQEEDCTDGSDELDCGGPCMLYQVPCAHSPHCVS--PGQLCDGVTQCPDGSDEDPDVC 1680

  Fly  1586 DESDSNYTSKSNSNNSNGGATKHSSSSAAACLQYGYDSEPYPPPPTPRSHYHSDVRIVPESSCP 1649
            :|           .:::|||.:    :.|.|                           ||.|||
Mouse  1681 EE-----------QSASGGANR----TGAPC---------------------------PEFSCP 1702

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
arrNP_524737.2 LY 162..201 CDD:214531
NHL 168..503 CDD:302697
NHL repeat 172..237 CDD:271320
LY 252..293 CDD:214531
NHL repeat 261..298 CDD:271320
NHL repeat 303..339 CDD:271320
NHL repeat 341..419 CDD:271320
NHL repeat 428..476 CDD:271320
LY 472..511 CDD:214531
NHL repeat 477..503 CDD:271320
Ldl_recept_b 534..573 CDD:278487
LY 558..599 CDD:214531
LY 600..641 CDD:214531
FXa_inhibition 668..703 CDD:291342
LY 739..773 CDD:214531 6/28 (21%)
LY 776..818 CDD:214531 9/55 (16%)
LY 819..860 CDD:214531 13/47 (28%)
FXa_inhibition 973..1010 CDD:291342 12/52 (23%)
LY 1122..1164 CDD:214531 4/41 (10%)
FXa_inhibition 1273..1313 CDD:291342 13/113 (12%)
LDLa 1319..1362 CDD:238060 19/62 (31%)
LDLa 1365..1399 CDD:238060 17/33 (52%)
LDLa 1399..1433 CDD:197566 12/33 (36%)
SspoXP_017177063.1 VWD 229..378 CDD:214566
C8 434..505 CDD:370094
TIL 509..564 CDD:366828
VWD 593..753 CDD:214566 28/135 (21%)
C8 791..863 CDD:214843 16/110 (15%)
TIL 866..919 CDD:366828 14/60 (23%)
VWD 1054..1201 CDD:365869 32/180 (18%)
C8 1245..1311 CDD:370094 7/65 (11%)
TIL 1315..1371 CDD:366828 7/55 (13%)
LDLa 1416..1451 CDD:238060 13/34 (38%)
LDLa 1456..1490 CDD:238060 17/33 (52%)
LDLa 1492..1526 CDD:238060 14/36 (39%)
LDLa 1532..1563 CDD:197566 5/33 (15%)
Ldl_recept_a 1603..1639 CDD:365841 8/35 (23%)
TSP1 1737..1788 CDD:214559
TIL 1857..1908 CDD:366828
TSP1 1952..2005 CDD:214559
FA58C <2142..2262 CDD:330301
LDLa 2275..2309 CDD:238060
LDLa 2414..2448 CDD:238060
LDLa 2471..2505 CDD:238060
TSP1 2565..2617 CDD:214559
TIL 2640..2682 CDD:366828
TSP1 2725..2774 CDD:214559
TSP_1 2841..2889 CDD:365867
TIL 2893..2952 CDD:366828
VWC_out 2954..3001 CDD:214565
TSP1 2994..3045 CDD:214559
TIL 3097..3149 CDD:366828
TSP1 3193..3256 CDD:214559
TSP1 3262..3314 CDD:214559
TIL 3322..3372 CDD:366828
TSP1 3418..>3458 CDD:214559
TSP1 3482..3526 CDD:214559
TIL 3536..3592 CDD:366828
TSP1 3655..3699 CDD:214559
TSP1 3832..3884 CDD:214559
TSP1 3901..3949 CDD:214559
TSP1 3967..4020 CDD:214559
TSP1 4025..4077 CDD:214559
TIL 4080..4135 CDD:366828
TSP1 4180..4230 CDD:214559
TSP1 4274..4325 CDD:214559
TSP1 4389..4440 CDD:214559
TIL 4444..4499 CDD:366828
TSP1 4639..4687 CDD:214559
TIL 4701..4747 CDD:366828
TSP1 4791..4840 CDD:214559
TIL 4842..4896 CDD:366828
TIL 4948..5006 CDD:366828
VWC 5008..5063 CDD:327433
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1215
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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