DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment arr and lrp3

DIOPT Version :9

Sequence 1:NP_524737.2 Gene:arr / 44279 FlyBaseID:FBgn0000119 Length:1678 Species:Drosophila melanogaster
Sequence 2:XP_009301583.1 Gene:lrp3 / 100170796 ZFINID:ZDB-GENE-080116-3 Length:824 Species:Danio rerio


Alignment Length:851 Identity:193/851 - (22%)
Similarity:270/851 - (31%) Gaps:273/851 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   983 LCLAQPG--------RRGMTCA--CPTHYQLAKDGVSCI----PPRNYIIFSQRNCFGRLLPNTT 1033
            :|:|..|        |||:..:  .|.:|..   ||:|.    ..|..:|....:.|.  |..|.
Zfish    26 VCVAACGGKVELHTERRGVIYSPLWPLNYPA---GVNCSWNIQGSRGDVITISFHSFD--LEETG 85

  Fly  1034 DCPN-------------------IPLPVSGKNIRAVDYDPITHHIYWIEGRSHSIKRSLANGTKV 1079
            ||..                   :|.|......|.           |:...||:.....|.|.::
Zfish    86 DCRGDWLLLGPTWKAEYRLCGSVLPPPFISSRGRV-----------WVYFHSHANSSGQAQGFRM 139

  Fly  1080 SLLANSGQPFDLAIDIIGRLLFWTCSQSNSI--NVTSFLGESV-------GVIDTGDSEKPRN-I 1134
            |.             |.|||...:|.:...:  |     |:.|       |:.:.||:...|| :
Zfish   140 SY-------------IRGRLGQSSCEKDEYLCGN-----GKCVPRSWRCNGLDECGDNTDERNCV 186

  Fly  1135 AVHAMKR-------LLFWTDVGSHQAI--------IRARVDGNERVELAYKLEGVTALALDQQSD 1184
            |.....|       .|..:||.|.:.:        .|...||::.           |...|... 
Zfish   187 APPTPARASLCPPGTLQCSDVQSTRCLPGSLRCNGARDCPDGSDE-----------ARCPDTSC- 239

  Fly  1185 MIYYAHGKRI-------DAIDINGKNKKTLVSMHISQVINIAALGGFVYWLDDKTGV-ERITVN- 1240
                  |||:       .:.|....|:.|...:|.:..::.......|..:|.:.|| :.:.|. 
Zfish   240 ------GKRLVNFYGTFASPDFFRPNRSTGTDLHCTWFLDTKDPKPLVLQVDLQLGVGDSVRVYD 298

  Fly  1241 --GERRSAELQRLPQITDIRAVWTPDPK---VLRNHTCMHSRTKCSHICIASGEGIARTRDVCSC 1300
              ||:....||.|....:.|.......:   .:..|...||          .|.|...|..|   
Zfish   299 GLGEQAERLLQSLSHHNNHRRALLESSQGQMSIFYHAKPHS----------PGHGFNATYQV--- 350

  Fly  1301 PKHLMLLEDKENCGAFPA---CGPDHFTCAAPVSGISDVNKDCIPASWRCDGQKDCPDKSDEVGC 1362
                     |..|  ||.   ||.|               :.|.....||||...||...||..|
Zfish   351 ---------KGYC--FPGEHPCGTD---------------EGCYSDLQRCDGYWHCPGGRDEEAC 389

  Fly  1363 PTCRADQFSCQ--SGECIDKSLVCDGTTNCANGHDEADC--CKRPGEFQCPINKLCISAALLCDG 1423
            |.|:..::.|:  ||.|...|..|:....|.:|.||.:|  | :||.|.|..| |||.....|||
Zfish   390 PLCQPGEYPCEGGSGACYSASERCNNQKKCPDGSDEKNCFDC-QPGNFHCGTN-LCIFETWRCDG 452

  Fly  1424 WENCADGADESSDICLQRRMAPATDKRAFMILIGATMITIFSIVYL-----LQFCRTR------I 1477
            .|:|.||:||..  ||    |....|.....|||:.:..:..::.|     |...|||      .
Zfish   453 QEDCMDGSDERD--CL----ASVPRKVITAALIGSLVCGLLLVIALGCAFKLYSLRTREYRAFET 511

  Fly  1478 GKSRTEPKDDQATDPLSPSTLSKSQRVSKIAS--VADAVRMSTL-NSRNSMNSYDRNHITGASSS 1539
            ..:|.|.:..|...|.|...|.....:..:..  |.:..:.|.| |.|::|....|.|.:..|||
Zfish   512 QMTRLEAEFVQREAPPSYGQLIAQGLIPPVDDFPVYNPTQASVLQNLRSAMRRQIRRHSSRRSSS 576

  Fly  1540 TT-----------NGSSMVA-YPINPPPSPATRSRRPYRHYKIIN--------------QPPP-- 1576
            ..           .||.:.. .|:..||.....:..|..:....|              |.||  
Zfish   577 RRRLGRLWNRLFHRGSRVRGQIPLLTPPGHTHANTYPELNLHSYNTADNSVRESPETTGQTPPSC 641

  Fly  1577 ------------------------------PTP-----CSTDICDESDSNYTSKSNSNNSNGGAT 1606
                                          |:|     .|..:.||.|.:..|   |....|...
Zfish   642 SAVALGLALQAQNDALCLPDRESPASPLSLPSPNSLHSTSDTLEDEDDEDDRS---SAGKQGILA 703

  Fly  1607 KHSSSSAAACLQYGYDSEPYPP--PPTPRSHYHSDVRIVPESSCP---PSPSSRSSTYFSPLPPP 1666
            ||..:          ||.|.|.  |....|...|..|:|.|.:..   .|....:|...|||..|
Zfish   704 KHKDA----------DSSPGPSERPKRSASRSRSSRRLVQELAAELRGVSLLRYTSVGISPLSSP 758

  Fly  1667 PSPVQS 1672
            .||..|
Zfish   759 ESPTSS 764

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
arrNP_524737.2 LY 162..201 CDD:214531
NHL 168..503 CDD:302697
NHL repeat 172..237 CDD:271320
LY 252..293 CDD:214531
NHL repeat 261..298 CDD:271320
NHL repeat 303..339 CDD:271320
NHL repeat 341..419 CDD:271320
NHL repeat 428..476 CDD:271320
LY 472..511 CDD:214531
NHL repeat 477..503 CDD:271320
Ldl_recept_b 534..573 CDD:278487
LY 558..599 CDD:214531
LY 600..641 CDD:214531
FXa_inhibition 668..703 CDD:291342
LY 739..773 CDD:214531
LY 776..818 CDD:214531
LY 819..860 CDD:214531
FXa_inhibition 973..1010 CDD:291342 10/36 (28%)
LY 1122..1164 CDD:214531 13/57 (23%)
FXa_inhibition 1273..1313 CDD:291342 7/39 (18%)
LDLa 1319..1362 CDD:238060 12/42 (29%)
LDLa 1365..1399 CDD:238060 11/35 (31%)
LDLa 1399..1433 CDD:197566 17/35 (49%)
lrp3XP_009301583.1 CUB 31..141 CDD:238001 24/125 (19%)
LDLa 151..185 CDD:238060 8/38 (21%)
LDLa 197..234 CDD:238060 8/47 (17%)
CUB 239..350 CDD:238001 24/127 (19%)
LDLa 354..389 CDD:238060 15/51 (29%)
LDLa 392..428 CDD:238060 11/35 (31%)
LDLa 431..465 CDD:238060 18/37 (49%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170590472
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1215
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.830

Return to query results.
Submit another query.