DRSC/TRiP Functional Genomics Resources

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Protein Alignment SoxN and IXR1

DIOPT Version :9

Sequence 1:NP_001260269.1 Gene:SoxN / 44275 FlyBaseID:FBgn0029123 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_012893.3 Gene:IXR1 / 853836 SGDID:S000001515 Length:597 Species:Saccharomyces cerevisiae


Alignment Length:795 Identity:154/795 - (19%)
Similarity:229/795 - (28%) Gaps:334/795 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 LMNLGQSHLTHSQLSHHNHHHHHMSAHIAASQSPNP-LSSLQSSMANTLNGSQVGQQQQQQQQQQ 103
            |:|:||.|....|...||...:..::|    |:|:. |:..|:...     .|..||||||||||
Yeast    17 LLNIGQDHSLQYQGLEHNDSQYRDASH----QTPHQYLNQFQAQPQ-----QQQQQQQQQQQQQQ 72

  Fly   104 SSPLHSSSELSPTQSSIGSHH------MTSPVSHQQHTQQQQHGQQQHLGAGSALSSLTGGSSNN 162
            .:|.....:.||.|.....::      :|.|.|..|..||||. |||:           ..|::|
Yeast    73 QAPYQGHFQQSPQQQQQNVYYPLPPQSLTQPTSQSQQQQQQQQ-QQQY-----------ANSNSN 125

  Fly   163 NNNSATANKNQQHADRVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRP 227
            :||:...|...|..        .:|     |:.....:.|.::..:.|:...:....|::.:..|
Yeast   126 SNNNVNVNALPQDF--------GYM-----QQTGSGQNYPTINQQQFSEFYNSFLSHLTQKQTNP 177

  Fly   228 FIDEAKRLRAVHMKEHPDYKYRPRRKTKTLTKTKEKYPMGGLMPGQTVGGGAPGEPVTPTRVQGQ 292
                                                                   .||.|.....
Yeast   178 -------------------------------------------------------SVTGTGASSN 187

  Fly   293 PGQNQSLNGSGGSAAAAAAAAAAAAQQARQDMYQMNAPNGYMPNGYMMHADPAGAAAYQTSYMGQ 357
            ...|.:...||.::.::..|..||:|                       .:||.|||        
Yeast   188 NNSNNNNVSSGNNSTSSNPAQLAASQ-----------------------LNPATAAA-------- 221

  Fly   358 HYAAQRYDMGHMYNNGYAMYQTVSGGQTSPYGSSLQQPGSPSPYGGSSLQQQPGSPTPYGGGGGG 422
                                            ::......|:.|    |.|.|            
Yeast   222 --------------------------------AAANNAAGPASY----LSQLP------------ 238

  Fly   423 GGQVSCQSHSPSDSSIKSEPVSPSPSAIALNNNNNINNNHIMKREYSSAAAAAAAAAAAAAAGGG 487
              ||  |.:.|::.:..|..:.||.:..|..|.|...:..::.                      
Yeast   239 --QV--QRYYPNNMNALSSLLDPSSAGNAAGNANTATHPGLLP---------------------- 277

  Fly   488 ELNHLMNMYHLPDEQRHLLHYQTD-SPDLQQQHQSMQQQQQHLPQQHLSQQHQQIPQQHHTMQQQ 551
                       |:.|..|.|:|.. ...||.|.|...||||.|.|||..||.||:.||||.:|||
Yeast   278 -----------PNLQPQLTHHQQQMQQQLQLQQQQQLQQQQQLQQQHQLQQQQQLQQQHHHLQQQ 331

  Fly   552 QQQH-------------HLQHQQSLRAMAP--------------------------LAHMXEMAS 577
            |||.             .::.::.|:...|                          :..:.::||
Yeast   332 QQQQQHPVVKKLSSTQSRIERRKQLKKQGPKRPSSAYFLFSMSIRNELLQQFPEAKVPELSKLAS 396

  Fly   578 AYGAAGSSVSVSP---------------------PLPPYMPTAPQQQQQQQQQQQQLLNGRPSPT 621
            |.....:.....|                     .|||..|:.|..|..|:.        ||:..
Yeast   397 ARWKELTDDQKKPFYEEFRTNWEKYRVVRDAYEKTLPPKRPSGPFIQFTQEI--------RPTVV 453

  Fly   622 ASGSSGG--------------RSSAHSSGHTAAHSPALAAAYQLTPSAATSSATSAAAAAATAAA 672
            ......|              ...|..:.:|..:...|.......|.....:..           
Yeast   454 KENPDKGLIEITKIIGERWRELDPAKKAEYTETYKKRLKEWESCYPDENDPNGN----------- 507

  Fly   673 VAAAAAAGSSFAASASMLDMQQQHLEEQQQHHHLHYQ-----------------------QQQQQ 714
                 ..|.|..|....|:|..:.:|.|....|:...                       ..|||
Yeast   508 -----PTGHSHKAMNMNLNMDTKIMENQDSIEHITANAIDSVTGSNSNSTNPNTPVSPPISLQQQ 567

  Fly   715 HYQQQQQQQQQLQHL 729
            ..|||||||||.||:
Yeast   568 PLQQQQQQQQQQQHM 582

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SoxNNP_001260269.1 SOX-TCF_HMG-box 178..249 CDD:238684 6/70 (9%)
IXR1NP_012893.3 NHP6B <338..501 CDD:227935 20/170 (12%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 46 1.000 Domainoid score I3058
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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