DRSC/TRiP Functional Genomics Resources

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Protein Alignment SoxN and HMGB6

DIOPT Version :9

Sequence 1:NP_001260269.1 Gene:SoxN / 44275 FlyBaseID:FBgn0029123 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_568431.1 Gene:HMGB6 / 832408 AraportID:AT5G23420 Length:241 Species:Arabidopsis thaliana


Alignment Length:87 Identity:26/87 - (29%)
Similarity:47/87 - (54%) Gaps:15/87 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   159 SSNNNNNSATANKNQQHADRVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRL----GAQWKD 219
            :::...:|:|:||       .|||:.||.::....|:...|:    ||..::|..    |.:||.
plant   102 TNDEKKSSSTSNK-------PKRPLTAFFIFMSDFRKTFKSE----HNGSLAKDAAKIGGEKWKS 155

  Fly   220 LSESEKRPFIDEAKRLRAVHMK 241
            |:|.||:.::|:|..|:|.:.|
plant   156 LTEEEKKVYLDKAAELKAEYNK 177

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SoxNNP_001260269.1 SOX-TCF_HMG-box 178..249 CDD:238684 22/68 (32%)
HMGB6NP_568431.1 HMGB-UBF_HMG-box 115..179 CDD:238686 22/67 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1641977at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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