DRSC/TRiP Functional Genomics Resources

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Protein Alignment SoxN and AT5G23405

DIOPT Version :10

Sequence 1:NP_001260269.1 Gene:SoxN / 44275 FlyBaseID:FBgn0029123 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_851063.1 Gene:AT5G23405 / 832406 AraportID:AT5G23405 Length:149 Species:Arabidopsis thaliana


Alignment Length:66 Identity:17/66 - (25%)
Similarity:31/66 - (46%) Gaps:17/66 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   180 KRPMNA---------FMVWSRGQRRKMASDNPKMHNSEISK---RLG-AQWKDLSESEKRPFIDE 231
            |:|.|.         |.|:....|:...:|    :|..:.|   ::| ..||.::|.||:.::|:
plant    55 KKPTNKKKSTTSLTDFAVFMNHFRKSFRTD----YNGALVKEGSKIGWEMWKSMTEDEKKDYLDK 115

  Fly   232 A 232
            |
plant   116 A 116

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SoxNNP_001260269.1 HMG-box_SoxB 177..252 CDD:438790 17/66 (26%)
AT5G23405NP_851063.1 HMG-box_AtHMGB1-like 68..117 CDD:438821 14/53 (26%)

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