Protein Alignment SoxN and HMGB4

DIOPT Version :9

• Sequence 1: NP_001260269.1
• Gene: SoxN / 44275
• FlyBaseID: FBgn0029123
• Length: 761
• Species: Drosophila melanogaster
• Sequence 2: NP_001031364.2
• Gene: HMGB4 / 816263
• AraportID: AT2G17560
• Length: 138
• Species: Arabidopsis thaliana
• Alignment Length: 106
• Identity: 24/106 - (22%)
• Similarity: 49/106 - (46%)
• Gaps: 11/106 - (10%)

  Fly   155 LTGGSSNNNNNSA----------TANKNQQHADRVKRPMNAFMVWSRGQRRKMASDNPKMHN-SE 208
            :.||.|.....|.          ...|.::..::.|||.:||.|:....|::....||...: :.
plant     1 MKGGESKAEATSTDQRLKTRGRKAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVAT 65

  Fly   209 ISKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKEHPDYKYR 249
            :.|..||:||.:::.:|.|::.:|:..:..::|....|..:
plant    66 VGKAAGARWKAMTDEDKAPYVAKAESRKTEYIKNVQQYNLK 106

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
SoxN	NP_001260269.1	SOX-TCF_HMG-box	178..249	CDD:238684	19/71 (27%)
HMGB4	NP_001031364.2	HMG_box	35..103	CDD:278906	18/67 (27%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1641977at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.920