DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SoxN and SOX4

DIOPT Version :10

Sequence 1:NP_001260269.1 Gene:SoxN / 44275 FlyBaseID:FBgn0029123 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_003098.1 Gene:SOX4 / 6659 HGNCID:11200 Length:474 Species:Homo sapiens


Alignment Length:589 Identity:149/589 - (25%)
Similarity:216/589 - (36%) Gaps:202/589 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   125 MTSPVSHQQHTQQQQHGQQQHLGAGSAL---SSLTGGSSNNNNNSA-TANKNQQHADRVKRPMNA 185
            |....::.::|:....|:....|||..|   ||.|.||:.:....| ..:..:..:..:||||||
Human     1 MVQQTNNAENTEALLAGESSDSGAGLELGIASSPTPGSTASTGGKADDPSWCKTPSGHIKRPMNA 65

  Fly   186 FMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKEHPDYKYRP 250
            |||||:.:|||:...:|.|||:|||||||.:||.|.:|:|.|||.||:|||..||.::|||||||
Human    66 FMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIREAERLRLKHMADYPDYKYRP 130

  Fly   251 RRKTKTLTKTKEKYPMGGLMPGQ---TVGGGAPGEPVTPTRVQGQPGQNQSLNGSGGSAAAAAAA 312
            |:|.|:..............||:   .|||...|.       .|..|...|.|..||...|:...
Human   131 RKKVKSGNANSSSSAAASSKPGEKGDKVGGSGGGG-------HGGGGGGGSSNAGGGGGGASGGG 188

  Fly   313 AAAAAQQARQDMYQMNAPNGYMPNGYMMHADPAGAAAYQTSYMGQHYAAQRYDMGHMYNNGYAMY 377
            |                           ::.|                ||:...|.....|    
Human   189 A---------------------------NSKP----------------AQKKSCGSKVAGG---- 206

  Fly   378 QTVSGGQTSPYGSSLQQPGSPSPYGGSSLQQQPGSPTPYGGGGGGGGQVSCQSHSPSDSSIKSEP 442
              ..||.:.|:...:                       ..||||||                   
Human   207 --AGGGVSKPHAKLI-----------------------LAGGGGGG------------------- 227

  Fly   443 VSPSPSAIALNNNNNINNNHIMKREYSSAAAAAAAAAAAAAAGGGELNHLMNMYHLP---DEQRH 504
                                       .|||||||:.||..||...|        ||   ....|
Human   228 ---------------------------KAAAAAAASFAAEQAGAAAL--------LPLGAAADHH 257

  Fly   505 LLHYQTDSPDLQQQHQSMQQQQQHL--PQQHLSQQHQQIPQQHHTMQQQQQQHHLQHQQSLRAMA 567
            .| |:..:|.......|.......|  |.:||:                        ::.::.:.
Human   258 SL-YKARTPSASASASSAASASAALAAPGKHLA------------------------EKKVKRVY 297

  Fly   568 PLAHMXEMASAYGAAGSSVSVSPPLPPY-------MPTAPQQQQQQQQQQQQLLNGRPSPTASGS 625
            ....:...:|..|..|:....|.||..|       .|.||.            |:|| |..||..
Human   298 LFGGLGTSSSPVGGVGAGADPSDPLGLYEEEGAGCSPDAPS------------LSGR-SSAASSP 349

  Fly   626 SGGRSSAHSSGHTA--AHSPALAAAYQLTPSAATSSATSAAAAAATAAAVAAAAAAGSSFAASAS 688
            :.|||.|...|:.:  |.|||        ||:|.|.|:|:|::.:::::.:.::::...|  ...
Human   350 AAGRSPADHRGYASLRAASPA--------PSSAPSHASSSASSHSSSSSSSGSSSSDDEF--EDD 404

  Fly   689 MLDM 692
            :||:
Human   405 LLDL 408

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SoxNNP_001260269.1 HMG-box_SoxB 177..252 CDD:438790 47/74 (64%)
SOX4NP_003098.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..58 13/56 (23%)
HMG-box_SoxC 58..133 CDD:438838 48/74 (65%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 128..228 34/224 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 262..286 4/23 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 302..416 35/130 (27%)
9aaTAD. /evidence=ECO:0000269|PubMed:34342803 426..434
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.