DRSC/TRiP Functional Genomics Resources

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Protein Alignment SoxN and SOX3

DIOPT Version :9

Sequence 1:NP_001260269.1 Gene:SoxN / 44275 FlyBaseID:FBgn0029123 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_005625.2 Gene:SOX3 / 6658 HGNCID:11199 Length:446 Species:Homo sapiens


Alignment Length:385 Identity:147/385 - (38%)
Similarity:183/385 - (47%) Gaps:94/385 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   147 GAGSALSSLTGGSSNNNNNS--ATANKNQQHADRVKRPMNAFMVWSRGQRRKMASDNPKMHNSEI 209
            |||.:.::..||:::...:|  |:........||||||||||||||||||||||.:|||||||||
Human   105 GAGKSSANAAGGANSGGGSSGGASGGGGGTDQDRVKRPMNAFMVWSRGQRRKMALENPKMHNSEI 169

  Fly   210 SKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKEHPDYKYRPRRKTKTLTKTKEKYPM-GGLMPGQ 273
            ||||||.||.|:::|||||||||||||||||||:||||||||||||||.| |:||.: .||:|  
Human   170 SKRLGADWKLLTDAEKRPFIDEAKRLRAVHMKEYPDYKYRPRRKTKTLLK-KDKYSLPSGLLP-- 231

  Fly   274 TVGGGAPGEPVTPTRVQGQPGQNQSLNGSGGSAAAAAAAAAAAAQQA------RQDMYQMNAPNG 332
                                        .|.:||||||||||||..:      |.|.|  ...||
Human   232 ----------------------------PGAAAAAAAAAAAAAAASSPVGVGQRLDTY--THVNG 266

  Fly   333 YMPNGYMMHADPAGAAAYQTSYMG----------QHYAAQRYDMGHMYNNGYAMYQTVSGGQTSP 387
            :....|.:..:..|.|  |...|.          .|    ||||              :|.|.||
Human   267 WANGAYSLVQEQLGYA--QPPSMSSPPPPPALPPMH----RYDM--------------AGLQYSP 311

  Fly   388 YGSSLQQPG------------SPSPYGGSSLQQQPGSPTPYG----GGGGGGGQVSCQSHSPSDS 436
                :..||            :.|.|||.:......:...||    .........:..|..|..|
Human   312 ----MMPPGAQSYMNVAAAAAAASGYGGMAPSATAAAAAAYGQQPATAAAAAAAAAAMSLGPMGS 372

  Fly   437 SIKSEPVSPSPSAIALNNNNNINNNHIMKREYSSAAAAAAAAAAAAAAGGGELNHLMNMY 496
            .:||||.||.|:..:.:....:.:...|...|  ......||.||:...||.|:.:...|
Human   373 VVKSEPSSPPPAIASHSQRACLGDLRDMISMY--LPPGGDAADAASPLPGGRLHGVHQHY 430

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SoxNNP_001260269.1 SOX-TCF_HMG-box 178..249 CDD:238684 62/70 (89%)
SOX3NP_005625.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 29..48
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 87..140 9/34 (26%)
SOX-TCF_HMG-box 138..209 CDD:238684 62/70 (89%)
SOXp 208..302 CDD:289133 41/132 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0527
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000028
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10270
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X927
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
54.910

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