DRSC/TRiP Functional Genomics Resources

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Protein Alignment SoxN and sox19b

DIOPT Version :9

Sequence 1:NP_001260269.1 Gene:SoxN / 44275 FlyBaseID:FBgn0029123 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_571777.1 Gene:sox19b / 64812 ZFINID:ZDB-GENE-010111-1 Length:293 Species:Danio rerio


Alignment Length:401 Identity:139/401 - (34%)
Similarity:170/401 - (42%) Gaps:125/401 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   125 MTSPVSHQQHTQQQQHGQQQHLGAGSALSSLTGGSSNNNNNSATA-NKNQQHADRVKRPMNAFMV 188
            |.|.:.|:..|....|..|...|    :|....|..|.::.|.|| .......|:||||||||||
Zfish     2 MYSMMEHELKTAGPPHTLQHSPG----MSPPGSGVGNAHHVSKTACPPGVDPMDKVKRPMNAFMV 62

  Fly   189 WSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKEHPDYKYRPRRK 253
            ||||||||||.:|||||||||||||||:||.|::.|||||||||||||||||||:|||||:||||
Zfish    63 WSRGQRRKMAQENPKMHNSEISKRLGAEWKLLTDVEKRPFIDEAKRLRAVHMKEYPDYKYKPRRK 127

  Fly   254 TKTLTKTKE---KYPMGGLMPGQTVGGGAPGEPVTPTRVQGQPGQNQSLNGSGGSAAAAAAAAAA 315
            ||.|.|...   |||:            |.|..:.....|||          |||          
Zfish   128 TKALMKKDNSVGKYPL------------AAGNLLASAVAQGQ----------GGS---------- 160

  Fly   316 AAQQARQDMYQMNAPNGYMPNGYMMHADPAGAAAYQTSYMGQHYAAQRYDMGHMYNNGYAMYQTV 380
                .|.|.|......|||              ..|...:|......|||:              
Zfish   161 ----PRMDGYGWGHAGGYM--------------GMQGDALGYPQQLHRYDL-------------- 193

  Fly   381 SGGQTSPYGSSLQQPGSPSPY--GGSSLQQQPGSPTPYGGGGGGGGQVSCQSHSPSDSSIKSEPV 443
                     |:||.|.: .||  ..||..|...|.:|             |..||..|.:|.||:
Zfish   194 ---------SALQYPAA-QPYMNSASSYSQMSYSSSP-------------QQPSPVMSMVKPEPL 235

  Fly   444 SPSPSAIALNNNNNINNNHIMKREYSSAAAAAAAAAAAAAAGGGELNHLMNMYHLPDEQRHLLHY 508
            |.||:.:.        |:|                   ..|..|:|..:::|| :|.........
Zfish   236 SHSPTGVP--------NHH-------------------RGAFQGDLRDMISMY-IPGGDTSESSN 272

  Fly   509 QTDSPDLQQQH 519
            |...|.:||.:
Zfish   273 QRAYPGVQQHY 283

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SoxNNP_001260269.1 SOX-TCF_HMG-box 178..249 CDD:238684 61/70 (87%)
sox19bNP_571777.1 SOX-TCF_HMG-box 52..123 CDD:238684 61/70 (87%)
SOXp 122..203 CDD:289133 35/154 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0527
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000028
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10270
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X927
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
65.910

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