DRSC/TRiP Functional Genomics Resources

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Protein Alignment SoxN and sox19b

DIOPT Version :10

Sequence 1:NP_001260269.1 Gene:SoxN / 44275 FlyBaseID:FBgn0029123 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_571777.1 Gene:sox19b / 64812 ZFINID:ZDB-GENE-010111-1 Length:293 Species:Danio rerio


Alignment Length:401 Identity:139/401 - (34%)
Similarity:170/401 - (42%) Gaps:125/401 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   125 MTSPVSHQQHTQQQQHGQQQHLGAGSALSSLTGGSSNNNNNSATA-NKNQQHADRVKRPMNAFMV 188
            |.|.:.|:..|....|..|...|    :|....|..|.::.|.|| .......|:||||||||||
Zfish     2 MYSMMEHELKTAGPPHTLQHSPG----MSPPGSGVGNAHHVSKTACPPGVDPMDKVKRPMNAFMV 62

  Fly   189 WSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKEHPDYKYRPRRK 253
            ||||||||||.:|||||||||||||||:||.|::.|||||||||||||||||||:|||||:||||
Zfish    63 WSRGQRRKMAQENPKMHNSEISKRLGAEWKLLTDVEKRPFIDEAKRLRAVHMKEYPDYKYKPRRK 127

  Fly   254 TKTLTKTKE---KYPMGGLMPGQTVGGGAPGEPVTPTRVQGQPGQNQSLNGSGGSAAAAAAAAAA 315
            ||.|.|...   |||:            |.|..:.....|||          |||          
Zfish   128 TKALMKKDNSVGKYPL------------AAGNLLASAVAQGQ----------GGS---------- 160

  Fly   316 AAQQARQDMYQMNAPNGYMPNGYMMHADPAGAAAYQTSYMGQHYAAQRYDMGHMYNNGYAMYQTV 380
                .|.|.|......|||              ..|...:|......|||:              
Zfish   161 ----PRMDGYGWGHAGGYM--------------GMQGDALGYPQQLHRYDL-------------- 193

  Fly   381 SGGQTSPYGSSLQQPGSPSPY--GGSSLQQQPGSPTPYGGGGGGGGQVSCQSHSPSDSSIKSEPV 443
                     |:||.|.: .||  ..||..|...|.:|             |..||..|.:|.||:
Zfish   194 ---------SALQYPAA-QPYMNSASSYSQMSYSSSP-------------QQPSPVMSMVKPEPL 235

  Fly   444 SPSPSAIALNNNNNINNNHIMKREYSSAAAAAAAAAAAAAAGGGELNHLMNMYHLPDEQRHLLHY 508
            |.||:.:.        |:|                   ..|..|:|..:::|| :|.........
Zfish   236 SHSPTGVP--------NHH-------------------RGAFQGDLRDMISMY-IPGGDTSESSN 272

  Fly   509 QTDSPDLQQQH 519
            |...|.:||.:
Zfish   273 QRAYPGVQQHY 283

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SoxNNP_001260269.1 HMG-box_SoxB 177..252 CDD:438790 64/74 (86%)
sox19bNP_571777.1 HMG-box_SoxB 51..130 CDD:438790 68/78 (87%)
SOXp 122..203 CDD:463537 35/154 (23%)

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