Protein Alignment SoxN and sox9b

DIOPT Version :10

• Sequence 1: NP_001260269.1
• Gene: SoxN / 44275
• FlyBaseID: FBgn0029123
• Length: 761
• Species: Drosophila melanogaster
• Sequence 2: NP_571719.1
• Gene: sox9b / 60642
• ZFINID: ZDB-GENE-001103-2
• Length: 407
• Species: Danio rerio
• Alignment Length: 581
• Identity: 132/581 - (22%)
• Similarity: 188/581 - (32%)
• Gaps: 253/581 - (43%)

  Fly    67 IAASQSPNPLSSLQSSMANTLNGSQVGQQQQQQQQQQSSPLHSSSELSPTQSSIGSHHMTSPVSH 131
            ::.|.:|:|  ||....|.:...| .|.....:..:...|||...:            ...||..
Zfish    10 MSVSGAPSP--SLSEDSAGSPCAS-AGSGSDSETPRAEPPLHRDEQ------------EKFPVCI 59

  Fly   132 QQHTQQQQHGQQQHL--------GAGSALSSLTGGSSNNNNNSATANKNQQHADRVKRPMNAFMV 188
            :....|...|....|        |:|                     |::.|   ||||||||||
Zfish    60 RDAVSQVLKGYDWSLVPMPVRVSGSG---------------------KSKPH---VKRPMNAFMV 100

  Fly   189 WSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKEHPDYKYRPRRK 253
            |::..|||:|...|.:||:|:||.||..|:.|:|.|||||::||:|||..|.|:||||||:|||:
Zfish   101 WAQAARRKLADQYPHLHNAELSKTLGKLWRLLNEGEKRPFVEEAERLRVQHKKDHPDYKYQPRRR 165

  Fly   254 TKTLTKTKEKYPMGGLMPGQTVGGGAPGEPVTPTRVQGQPGQNQSLNGSGGSAAAAAAAAAAAAQ 318
            ....:                  |.|..|....|::        |.|        |...|...|:
Zfish   166 KSVKS------------------GSAESEDGEQTQI--------STN--------ALFRALQRAE 196

  Fly   319 QARQDMYQMNAPNGYMPNGYMMHADPAGAAAYQTSYMGQHYAAQRYDMGHMYNNGYAMYQTVSGG 383
            .......::::|                         |:|                      ||
Zfish   197 TPDSSTGELHSP-------------------------GEH----------------------SG- 213

  Fly   384 QTSPYGSSLQQPGSPSPYGGSSLQQQPGSP---------------------TPYGGGGGGG---- 423
                     |..|.|:|         |.:|                     .|...|...|
Zfish   214 ---------QSQGPPTP---------PTTPKTDLPVCSKADLKRERERDRERPLQDGIDFGAVDI 260

  Fly   424 GQVSCQSHSPSD--SSIKSEPV-----------SPSPSAIALNNNNNINNNHIMKREYSSAAAAA 475
            |::|      ||  |:|::..|           :|.|:....::.            |.|||...
Zfish   261 GELS------SDVISNIEAFDVNEFDQYLPPHGAPGPAGAGFSSG------------YGSAAWMH 307

  Fly   476 AAAAAAAAAGGGELNHLMNMYHLPDEQRHLLHYQTDSPDLQQQHQSMQQQQQHLPQQHLSQQH-- 538
            ...|:::.|..||                             ||    ||:..:..:.||..|
Zfish   308 KPLASSSMANAGE-----------------------------QH----QQRAQIKTEQLSPGHYS 339

  Fly   539 QQIPQQHHTMQQQQQQHHLQHQQSLRAMAPLAHMXEMASAYGAAGSSVSVSPPLPPYMPTA 599
            ||.|||             |...:..:.|......|..|||.:...:.|.|  .|||.|.|
Zfish   340 QQPPQQ-------------QFYSAPYSRAQYTEYSEQHSAYYSPYPTFSYS--RPPYTPAA 385

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
SoxN	NP_001260269.1	HMG-box_SoxB	177..252	CDD:438790	45/74 (61%)
sox9b	NP_571719.1	Sox_N	16..80	CDD:463586	15/78 (19%)
		HMG-box_SoxE	90..164	CDD:438840	46/76 (61%)