DRSC/TRiP Functional Genomics Resources

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Protein Alignment SoxN and sox9a

DIOPT Version :9

Sequence 1:NP_001260269.1 Gene:SoxN / 44275 FlyBaseID:FBgn0029123 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_571718.1 Gene:sox9a / 60641 ZFINID:ZDB-GENE-001103-1 Length:462 Species:Danio rerio


Alignment Length:527 Identity:129/527 - (24%)
Similarity:199/527 - (37%) Gaps:146/527 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 SQSPNPLSSLQSSMANTLNGSQVGQQQQQQQQQQSSPLHSSSELSPTQSSIGSHHMTSPVSHQQH 134
            |.:|:|  |:....|.:...|..|...:..:..::|.|.:...|...:.   ......||..::.
Zfish    19 SDAPSP--SMSEDSAGSPCPSASGSDTENTRPAENSLLAADGTLGDFKK---DEEDKFPVCIREA 78

  Fly   135 TQQQQHGQQQHLGAGSALSSLTGGSSNNNNNSATANKNQQHADRVKRPMNAFMVWSRGQRRKMAS 199
            ..|...|....|   ..:.....|||          ||:.|   |||||||||||::..|||:|.
Zfish    79 VSQVLKGYDWTL---VPMPVRVNGSS----------KNKPH---VKRPMNAFMVWAQAARRKLAD 127

  Fly   200 DNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKEHPDYKYRPRRKTKTLTKTKEKY 264
            ..|.:||:|:||.||..|:.|:|.|||||::||:|||..|.|:||||||:|||: |::...:.:.
Zfish   128 QYPHLHNAELSKTLGKLWRLLNEVEKRPFVEEAERLRVQHKKDHPDYKYQPRRR-KSVKNGQSES 191

  Fly   265 PMGGLM-----------------PGQTVG---------GGAPGEPVTPT--RVQGQPGQNQSLNG 301
            ..|...                 |..::|         |.:.|.|..||  :...|||:      
Zfish   192 EDGSEQTHISPNAIFKALQQADSPASSMGEVHSPSEHSGQSQGPPTPPTTPKTDTQPGK------ 250

  Fly   302 SGGSAAAAAAAAAAAAQQARQDMYQMNAPNGYMPNGYMMHADPAGAAAYQTSYMGQHYAAQRYDM 366
                        |...::||.  .|.|.......|                        .|..|:
Zfish   251 ------------ADLKREARP--LQENTGRPLSIN------------------------FQDVDI 277

  Fly   367 GHMYN--------NGYAMYQTVSGGQTSPYGSS----LQQPGSPSPYGGSSLQQQPGSPTPYGGG 419
            |.:.:        |.:..|...:|.|.:||...    :.:|.:.||.........|..|      
Zfish   278 GELSSDVIETFDVNEFDQYLPPNGHQNAPYAGGYAAWMTKPQNGSPQSSQLTPLNPAEP------ 336

  Fly   420 GGGGGQVSCQSHSPSDSSIKSEPVSP--------SPSAIALNNNNNINNNH-------IMKREYS 469
                       ..|..:.||:|.:||        ||..|:..:.|..:..|       |.:.:|.
Zfish   337 -----------DQPRTTHIKTEQLSPSHYNEQQGSPQHISYGSFNVQHLQHYSTSFPSITRAQYD 390

  Fly   470 SAAAAAAAAAAAAAAGGGELNHLMNMY-HLPDEQRHLLHYQTDS---PDLQQQHQSMQQQQQHLP 530
            .:.:....|::.....||:.:.|.:.: ::...||.:.....||   |.:.|.:.|    .||..
Zfish   391 YSDSHQGGASSYYTHAGGQSSGLYSTFSYMSSSQRPMYTPIADSTGVPSIPQSNHS----PQHWD 451

  Fly   531 QQHLSQQ 537
            ||.:..|
Zfish   452 QQPVYTQ 458

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SoxNNP_001260269.1 SOX-TCF_HMG-box 178..249 CDD:238684 43/70 (61%)
sox9aNP_571718.1 Sox_N 22..96 CDD:289229 14/81 (17%)
SOX-TCF_HMG-box 106..176 CDD:238684 43/72 (60%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0527
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000028
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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