Protein Alignment SoxN and sox9a

DIOPT Version :10

• Sequence 1: NP_001260269.1
• Gene: SoxN / 44275
• FlyBaseID: FBgn0029123
• Length: 761
• Species: Drosophila melanogaster
• Sequence 2: NP_571718.1
• Gene: sox9a / 60641
• ZFINID: ZDB-GENE-001103-1
• Length: 462
• Species: Danio rerio
• Alignment Length: 527
• Identity: 129/527 - (24%)
• Similarity: 199/527 - (37%)
• Gaps: 146/527 - (27%)

  Fly    70 SQSPNPLSSLQSSMANTLNGSQVGQQQQQQQQQQSSPLHSSSELSPTQSSIGSHHMTSPVSHQQH 134
            |.:|:|  |:....|.:...|..|...:..:..::|.|.:...|...:.   ......||..::.
Zfish    19 SDAPSP--SMSEDSAGSPCPSASGSDTENTRPAENSLLAADGTLGDFKK---DEEDKFPVCIREA 78

  Fly   135 TQQQQHGQQQHLGAGSALSSLTGGSSNNNNNSATANKNQQHADRVKRPMNAFMVWSRGQRRKMAS 199
            ..|...|....|   ..:.....|||          ||:.|   |||||||||||::..|||:|.
Zfish    79 VSQVLKGYDWTL---VPMPVRVNGSS----------KNKPH---VKRPMNAFMVWAQAARRKLAD 127

  Fly   200 DNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKEHPDYKYRPRRKTKTLTKTKEKY 264
            ..|.:||:|:||.||..|:.|:|.|||||::||:|||..|.|:||||||:|||: |::...:.:.
Zfish   128 QYPHLHNAELSKTLGKLWRLLNEVEKRPFVEEAERLRVQHKKDHPDYKYQPRRR-KSVKNGQSES 191

  Fly   265 PMGGLM-----------------PGQTVG---------GGAPGEPVTPT--RVQGQPGQNQSLNG 301
            ..|...                 |..::|         |.:.|.|..||  :...|||:
Zfish   192 EDGSEQTHISPNAIFKALQQADSPASSMGEVHSPSEHSGQSQGPPTPPTTPKTDTQPGK------ 250

  Fly   302 SGGSAAAAAAAAAAAAQQARQDMYQMNAPNGYMPNGYMMHADPAGAAAYQTSYMGQHYAAQRYDM 366
                        |...::||.  .|.|.......|                        .|..|:
Zfish   251 ------------ADLKREARP--LQENTGRPLSIN------------------------FQDVDI 277

  Fly   367 GHMYN--------NGYAMYQTVSGGQTSPYGSS----LQQPGSPSPYGGSSLQQQPGSPTPYGGG 419
            |.:.:        |.:..|...:|.|.:||...    :.:|.:.||.........|..|
Zfish   278 GELSSDVIETFDVNEFDQYLPPNGHQNAPYAGGYAAWMTKPQNGSPQSSQLTPLNPAEP------ 336

  Fly   420 GGGGGQVSCQSHSPSDSSIKSEPVSP--------SPSAIALNNNNNINNNH-------IMKREYS 469
                       ..|..:.||:|.:||        ||..|:..:.|..:..|       |.:.:|.
Zfish   337 -----------DQPRTTHIKTEQLSPSHYNEQQGSPQHISYGSFNVQHLQHYSTSFPSITRAQYD 390

  Fly   470 SAAAAAAAAAAAAAAGGGELNHLMNMY-HLPDEQRHLLHYQTDS---PDLQQQHQSMQQQQQHLP 530
            .:.:....|::.....||:.:.|.:.: ::...||.:.....||   |.:.|.:.|    .||..
Zfish   391 YSDSHQGGASSYYTHAGGQSSGLYSTFSYMSSSQRPMYTPIADSTGVPSIPQSNHS----PQHWD 451

  Fly   531 QQHLSQQ 537
            ||.:..|
Zfish   452 QQPVYTQ 458

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
SoxN	NP_001260269.1	HMG-box_SoxB	177..252	CDD:438790	45/74 (61%)
sox9a	NP_571718.1	Sox_N	22..96	CDD:463586	14/81 (17%)
		HMG-box_SoxE	106..180	CDD:438840	46/76 (61%)