DRSC/TRiP Functional Genomics Resources

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Protein Alignment SoxN and hmgxb4

DIOPT Version :9

Sequence 1:NP_001260269.1 Gene:SoxN / 44275 FlyBaseID:FBgn0029123 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_001025555.1 Gene:hmgxb4 / 594948 XenbaseID:XB-GENE-951781 Length:554 Species:Xenopus tropicalis


Alignment Length:377 Identity:73/377 - (19%)
Similarity:127/377 - (33%) Gaps:116/377 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 SDMKGSLLHATMPPHHTSAALHGHAASPYSALAPLMNLGQSHLTHSQLSHHNHHHH------HMS 64
            ||....||.|...|...::..| ....|...||..:|..    :.||.||..||..      ..|
 Frog   106 SDTAMDLLKAITSPQVDTSTTH-LPKKPEKILATPVNFS----SPSQSSHKEHHKKIGEVSGDDS 165

  Fly    65 AHIAASQSPNPLSSLQSS---MANTLNGSQVGQQQQQQQQQQSSPLHSSSELS-PTQSSIGSHHM 125
            :|  .|:...||:..:..   |...|:.::  :.:::....|..|.||....| .|....|....
 Frog   166 SH--RSKKSKPLTLREPDGLRMKLILSPNE--KSEEESASPQGGPGHSEGASSKKTSKKTGREET 226

  Fly   126 TSPVSHQQHTQQQQHGQQQHLGAGSALSSLTGG--------------------SSNNNNNSATAN 170
            .|..||::| :::.|..:.  |.....:|.|||                    .|..:......:
 Frog   227 ESRSSHKKH-KKESHTPRS--GGTPDSASSTGGELEAGELIIDDSFHEMKKKKKSKKSKKKKDKH 288

  Fly   171 KNQQHADRVK---------RP-------------------------------------------- 182
            |:::|....|         ||                                            
 Frog   289 KDEKHRKHSKSKREHEGEERPTQIASPVLPSPPPPTATTPTSPPSVPPQALITHAEEQLDKKKKK 353

  Fly   183 ----------MNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRA 237
                      |:|:.|:|:..|..:.:::|.:...|:||:|...||.|.|.:|..:..:|:.|: 
 Frog   354 EDPEKPKKKNMSAYQVFSKEYRGSIIAEHPGIDFGELSKKLAEVWKQLPEKDKLAWKQKAQYLQ- 417

  Fly   238 VHMKEHPDYKYRPRRKTKTLTKTKEKYPMGGLMPGQTVGGGAPGEPVTPTRV 289
             |.:...:.....|:.:.:.:..:.|        |.:.|..:|.:. :||.|
 Frog   418 -HKQNKAEATTVKRKSSSSESAARSK--------GSSSGLPSPNKK-SPTSV 459

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SoxNNP_001260269.1 SOX-TCF_HMG-box 178..249 CDD:238684 21/133 (16%)
hmgxb4NP_001025555.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 14..34
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 47..368 49/273 (18%)
DUF4171 107..226 CDD:316308 30/127 (24%)
HMG-box 364..423 CDD:238037 18/60 (30%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 418..468 9/51 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1641977at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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