Protein Alignment SoxN and hmgb3a

DIOPT Version :9

• Sequence 1: NP_001260269.1
• Gene: SoxN / 44275
• FlyBaseID: FBgn0029123
• Length: 761
• Species: Drosophila melanogaster
• Sequence 2: NP_001116308.1
• Gene: hmgb3a / 561025
• ZFINID: ZDB-GENE-050428-1
• Length: 213
• Species: Danio rerio
• Alignment Length: 99
• Identity: 27/99 - (27%)
• Similarity: 49/99 - (49%)
• Gaps: 17/99 - (17%)

  Fly   180 KRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKEHP 244
            |||.:.|.::....|.::.:..|.:...:::|:||..|..|:::.|:||:.:|.:|:..:.|:..
Zfish    93 KRPPSGFFLFCSEHRPQIKAQYPSLGIGDVAKKLGEMWNGLTDANKQPFLMKANKLKDKYQKDVA 157

  Fly   245 DYKYRPRRKTKTLTKTKE-------KYPMGGLMP 271
            |||          ||:|.       ..||...||
Zfish   158 DYK----------TKSKAGGVSMGMGMPMANCMP 181

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
SoxN	NP_001260269.1	SOX-TCF_HMG-box	178..249	CDD:238684	20/68 (29%)
hmgb3a	NP_001116308.1	HMG_box_2	7..78	CDD:286146
		HMG_box	92..159	CDD:278906	17/65 (26%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1641977at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	1	1.010