DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SoxN and SOX6

DIOPT Version :9

Sequence 1:NP_001260269.1 Gene:SoxN / 44275 FlyBaseID:FBgn0029123 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_001139291.2 Gene:SOX6 / 55553 HGNCID:16421 Length:828 Species:Homo sapiens


Alignment Length:550 Identity:123/550 - (22%)
Similarity:191/550 - (34%) Gaps:216/550 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 AASPYSALAPLMNLGQSHLTHSQLSH---------------------HNHHHHHM----SAHIAA 69
            ||:..|.|:|| .|.:.|::|.|::.                     |:::|..:    :|.:|:
Human   313 AAAAASGLSPL-QLQKGHVSHPQINQRLKGLSDRFGRNLDTFEHGGGHSYNHKQIEQLYAAQLAS 376

  Fly    70 SQ-SPN---PLSSLQSSMANTLNGSQVGQQQ-------QQQQQQQSSPLHSSSE----------L 113
            .| ||.   |.:....:.|.|::.:.:..::       |.:.:..:.||:.||.          .
Human   377 MQVSPGAKMPSTPQPPNTAGTVSPTGIKNEKRGTSPVTQVKDEAAAQPLNLSSRPKTAEPVKSPT 441

  Fly   114 SPTQSSIGSHHMTSPVS------------------------------------------------ 130
            ||||:...: ..||||:                                                
Human   442 SPTQNLFPA-SKTSPVNLPNKSSIPSPIGGSLGRGSSLDILSSLNSPALFGDQDTVMKAIQEARK 505

  Fly   131 HQQHTQQQQHGQQQHLGAGSALSSLTG-----------------------GSSNNNNN------- 165
            .::..|::|..||.| |....|||:..                       |.||.:..       
Human   506 MREQIQREQQQQQPH-GVDGKLSSINNMGLNSCRNEKERTRFENLGPQLTGKSNEDGKLGPGVID 569

  Fly   166 -------------SATANKNQQH-------------------------ADRVKRPMNAFMVWSRG 192
                         :.:|.|.||:                         ...:||||||||||::.
Human   570 LTRPEDAEGSKAMNGSAAKLQQYYCWPTGGATVAEARVYRDARGRASSEPHIKRPMNAFMVWAKD 634

  Fly   193 QRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKEHPDYKYRPRRKTKTL 257
            :|||:....|.||||.|||.||::||.:|..||:|:.:|..||..:|::::|:|||:||.| :|.
Human   635 ERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQARLSKIHLEKYPNYKYKPRPK-RTC 698

  Fly   258 TKTKEKYPMG---GLMPGQ--------TVGGGAPGEPVTPTRVQGQPGQNQSLNGSGGSAAAAAA 311
            ....:|..:|   .||..:        || |..|..|:|.......||             |...
Human   699 IVDGKKLRIGEYKQLMRSRRQEMRQFFTV-GQQPQIPITTGTGVVYPG-------------AITM 749

  Fly   312 AAAAAAQQARQDMYQMNA-PNGYMP---NGYMMHADPAGAAAYQTSYMGQHYAAQRYDMGHMYNN 372
            |....:.|...|....:| |...:|   :.|.|..|....|                  |:...|
Human   750 ATTTPSPQMTSDCSSTSASPEPSLPVIQSTYGMKTDGGSLA------------------GNEMIN 796

  Fly   373 G---YAMYQTVSGGQTSPYGSSLQQPGSPS 399
            |   ..||........|.|.|..:.|.:.|
Human   797 GEDEMEMYDDYEDDPKSDYSSENEAPEAVS 826

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SoxNNP_001260269.1 SOX-TCF_HMG-box 178..249 CDD:238684 36/70 (51%)
SOX6NP_001139291.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..51
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 380..470 18/90 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 753..828 18/91 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0527
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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