DRSC/TRiP Functional Genomics Resources

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Protein Alignment SoxN and RGD1559962

DIOPT Version :9

Sequence 1:NP_001260269.1 Gene:SoxN / 44275 FlyBaseID:FBgn0029123 Length:761 Species:Drosophila melanogaster
Sequence 2:XP_008756867.1 Gene:RGD1559962 / 498988 RGDID:1559962 Length:209 Species:Rattus norvegicus


Alignment Length:104 Identity:28/104 - (26%)
Similarity:50/104 - (48%) Gaps:12/104 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   180 KRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKEHP 244
            |||.:||.::....|.|:.|::|.:...:.:|:||..|.:.|..:|:|:..:|.:|:..:.|:..
  Rat    96 KRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEEYEKDIA 160

  Fly   245 DYKYRPRRKTKTLTKTKEKYPMGGLMPGQTVGGGAPGEP 283
            .|            :.|.|..:|...||:..|.....||
  Rat   161 AY------------RAKGKSEVGKKGPGRPTGSKKKNEP 187

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SoxNNP_001260269.1 SOX-TCF_HMG-box 178..249 CDD:238684 20/68 (29%)
RGD1559962XP_008756867.1 HMG-box 7..78 CDD:294061
HMG_box 95..162 CDD:278906 19/65 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1641977at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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