Protein Alignment SoxN and tHMG1

DIOPT Version :9

• Sequence 1: NP_001260269.1
• Gene: SoxN / 44275
• FlyBaseID: FBgn0029123
• Length: 761
• Species: Drosophila melanogaster
• Sequence 2: NP_651055.1
• Gene: tHMG1 / 42650
• FlyBaseID: FBgn0038978
• Length: 126
• Species: Drosophila melanogaster
• Alignment Length: 76
• Identity: 21/76 - (27%)
• Similarity: 38/76 - (50%)
• Gaps: 10/76 - (13%)

  Fly   178 RVKRPMNAFMVWSRGQRRK-MASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHM- 240
            |.|:||:|||:|.....|| :.:::|.....|:|.:.|..|:.:::.:|..:.:.|....|.:.
  Fly     7 RPKKPMSAFMLWMNSTGRKHIKAEHPDFSVQEVSVKGGEMWRAMADEDKIVWQESATTAMAEYKE 71

  Fly   241 --------KEH 243
                    |||
  Fly    72 KLKQWNFPKEH 82

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
SoxN	NP_001260269.1	SOX-TCF_HMG-box	178..249	CDD:238684	21/76 (28%)
tHMG1	NP_651055.1	HMGB-UBF_HMG-box	8..74	CDD:238686	17/65 (26%)
		Herpes_U55	<55..>116	CDD:253772	6/28 (21%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1641977at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	2	1.920