DRSC/TRiP Functional Genomics Resources

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Protein Alignment SoxN and sox17b

DIOPT Version :10

Sequence 1:NP_001260269.1 Gene:SoxN / 44275 FlyBaseID:FBgn0029123 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_988849.1 Gene:sox17b / 394440 XenbaseID:XB-GENE-484865 Length:376 Species:Xenopus tropicalis


Alignment Length:362 Identity:94/362 - (25%)
Similarity:153/362 - (42%) Gaps:84/362 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   120 IGSHHMTSPVSHQQHTQQQQHGQQQHLGAGSALSSLTGGSSNNNNNSATANKNQQHADRVKRPMN 184
            :|.:..|.|::..|..:.::.       ||||          |:...|.|        |::||||
 Frog    24 MGQYEWTDPLTMFQDAKTKKE-------AGSA----------NSRGKAEA--------RIRRPMN 63

  Fly   185 AFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKEHPDYKYR 249
            |||||::.:|:::|..||.:||:|:||.||..||.|:.:.||||::||:|||..|::::||||||
 Frog    64 AFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKSLTLASKRPFVEEAERLRVQHIQDYPDYKYR 128

  Fly   250 PRRK--TKTLTKTKEKYPMGGLMPGQTVGGGAPGEPVTPTRVQGQPGQNQSLNGSGGSAAAAAAA 312
            ||||  .|.:.:.:|.:.....:||..|.|           .....|||..:..||.::..:...
 Frog   129 PRRKKQVKRMKREEEGFLPSADIPGPQVMG-----------CNAMVGQNYKMQYSGQNSQQSQIT 182

  Fly   313 AAAAAQQARQDMYQ---MNAPNGYMPNGYMMHADPAGAAAYQTSYMGQHYAAQRYDMGHMYNNGY 374
            .|...:......|.   .|.|..||.....:...|.....||.             :.:.:|:.|
 Frog   183 PAGYFEDHNPVGYYYRGYNVPEYYMSQNSSVTCGPPAQGEYQA-------------LSYNFNSSY 234

  Fly   375 AMYQTVSGGQTSPYGSSLQQPGSPSPYGGSSLQQQPG--------SPTPYGGGGGGGGQVSCQSH 431
            ..||         ..:|....|.......:.:|:.|.        ||..|.|          |.:
 Frog   235 IPYQ---------QNASAPAMGKQMAVKENIIQESPEHGIMGCQVSPQMYNG----------QMY 280

  Fly   432 SPSDSSIKSEPVSPSPSAIALNNNNN-INNNHIMKRE 467
            .|  ...|:.||:.:....:|:.:.. :..|::..::
 Frog   281 VP--ECAKTHPVAQTEQHSSLHQSQQMVTQNYLPSQQ 315

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SoxNNP_001260269.1 HMG-box_SoxB 177..252 CDD:438790 41/74 (55%)
sox17bNP_988849.1 HMG-box_SoxF_SOX17 52..132 CDD:438850 44/87 (51%)
PABP-1234 <80..250 CDD:130689 58/202 (29%)
9aaTAD. /evidence=ECO:0000250|UniProtKB:Q9H6I2 326..334
Required for transcriptional activity and interaction with ctnnb1. /evidence=ECO:0000250|UniProtKB:O42601 327..331
Blue background indicates that the domain is not in the aligned region.

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