DRSC/TRiP Functional Genomics Resources

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Protein Alignment SoxN and MEIOSIN

DIOPT Version :9

Sequence 1:NP_001260269.1 Gene:SoxN / 44275 FlyBaseID:FBgn0029123 Length:761 Species:Drosophila melanogaster
Sequence 2:XP_011525873.1 Gene:MEIOSIN / 388553 HGNCID:44318 Length:644 Species:Homo sapiens


Alignment Length:212 Identity:42/212 - (19%)
Similarity:82/212 - (38%) Gaps:55/212 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 QSHLTHSQLSHHNHHHHHMSAHIAASQSPNPLSSLQSSMANTLNGSQVGQQQQQQQQQQSSPLHS 109
            :||..|......:|.:..:|.:..|..|    ||..||.:::...|......:|::..|::|:.:
Human   433 ESHSLHRSSVSLDHCYLSLSGNSKAPSS----SSSSSSSSSSSEDSDSEPLWKQREDMQANPVGT 493

  Fly   110 --SSE------LSPTQSSIGSHHMTSPVSHQQHTQQQQHGQQQHLGAGSALSSLTGGSSNNNNNS 166
              |||      .:||:       :.||:.                   :|....|.|.       
Human   494 PGSSEEDEDTTWTPTR-------LASPLL-------------------AAEKKATKGQ------- 525

  Fly   167 ATANKNQQHADRVKRP---------MNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSE 222
             .|....:..::.|.|         :|.|:::.|..|::.....|...::..:|.|...|:.:::
Human   526 -VARAPVKPKEKKKGPCPPQMKKKCVNGFIMFCRMNRKQYIRSCPGTASTAATKELAQLWRVMTQ 589

  Fly   223 SEKRPFIDEAKRLRAVH 239
            .|:||:..:|:|....|
Human   590 QERRPYCTKARRFSRQH 606

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SoxNNP_001260269.1 SOX-TCF_HMG-box 178..249 CDD:238684 16/71 (23%)
MEIOSINXP_011525873.1 HMG-box 547..606 CDD:294061 13/58 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0527
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.900

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