DRSC/TRiP Functional Genomics Resources

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Protein Alignment SoxN and HmgZ

DIOPT Version :10

Sequence 1:NP_001260269.1 Gene:SoxN / 44275 FlyBaseID:FBgn0029123 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_726106.1 Gene:HmgZ / 37480 FlyBaseID:FBgn0010228 Length:111 Species:Drosophila melanogaster


Alignment Length:94 Identity:26/94 - (27%)
Similarity:49/94 - (52%) Gaps:9/94 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   177 DRVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHMK 241
            ||.|||::|:|:|....|.::..|||....::|:||.|..|:.|  .:|..:..:|.:::..:.|
  Fly     4 DRPKRPLSAYMLWLNETREQIKKDNPGSKVTDIAKRGGELWRGL--KDKTEWEQKAIKMKEEYNK 66

  Fly   242 EHPDYKYR-------PRRKTKTLTKTKEK 263
            ...:|:..       |:::.|...|..:|
  Fly    67 AVKEYEANGGTDSGAPKKRKKAAAKPAKK 95

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SoxNNP_001260269.1 HMG-box_SoxB 177..252 CDD:438790 23/81 (28%)
HmgZNP_726106.1 HMG-box_SSRP1-like 8..72 CDD:438810 18/65 (28%)

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