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Protein Alignment SoxN and HMGB1
DIOPT Version :9
Sequence 1: | NP_001260269.1 |
Gene: | SoxN / 44275 |
FlyBaseID: | FBgn0029123 |
Length: | 761 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_001300821.1 |
Gene: | HMGB1 / 3146 |
HGNCID: | 4983 |
Length: | 215 |
Species: | Homo sapiens |
Alignment Length: | 85 |
Identity: | 22/85 - (25%) |
Similarity: | 47/85 - (55%) |
Gaps: | 2/85 - (2%) |
- Green bases have known domain annotations that are detailed below.
Fly 180 KRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKEHP 244
|||.:||.::....|.|:..::|.:...:::|:||..|.:.:..:|:|:..:|.:|:..:.|:..
Human 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIA 160
Fly 245 DY--KYRPRRKTKTLTKTKE 262
.| |.:|....|.:.|.::
Human 161 AYRAKGKPDAAKKGVVKAEK 180
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
SoxN | NP_001260269.1 |
SOX-TCF_HMG-box |
178..249 |
CDD:238684 |
19/70 (27%) |
Software error:
Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.
For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message
and the time and date of the error.