Protein Alignment SoxN and sox11b

DIOPT Version :10

• Sequence 1: NP_001260269.1
• Gene: SoxN / 44275
• FlyBaseID: FBgn0029123
• Length: 761
• Species: Drosophila melanogaster
• Sequence 2: NP_571412.1
• Gene: sox11b / 30603
• ZFINID: ZDB-GENE-980526-466
• Length: 368
• Species: Danio rerio
• Alignment Length: 312
• Identity: 83/312 - (26%)
• Similarity: 117/312 - (37%)
• Gaps: 120/312 - (38%)

  Fly   179 VKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKEH 243
            :|||||||||||:.:|||:...:|.|||:|||||||.:||.|.:|||.|||.||:|||..||.::
Zfish    46 IKRPMNAFMVWSKIERRKIMEQSPDMHNAEISKRLGKRWKMLKDSEKIPFIREAERLRLQHMADY 110

  Fly   244 PDYKYRPRRKTKTLTKTKEKYPMGGLMPGQTVGGGAPGEPVTPTRVQGQPGQNQSLNGSGGSAAA 308
            |||||||::|.|..:.:|                         ..||.....::|:..:.|...|
Zfish   111 PDYKYRPKKKPKLDSSSK-------------------------PAVQSPEKISKSVKAAAGKKCA 150

  Fly   309 -------AAAAAAAAAQQAR----------------------------------QDMYQMNAPNG 332
                   ....|.|:.|..|                                  :|.|:
Zfish   151 KLKPSKPGNITARASTQDCRFNYVFTNLKVTKSIKRELTDDEDDDDDDDDDDDEEDDYE------ 209

  Fly   333 YMPNGYMMHADPAGAAAYQTSYMGQHYAAQRYDMGHMYNNGYAMYQTVSGGQTSPYGSSLQQ--- 394
                                            |..|:..:......|:|....|.:|:|:.:
Zfish   210 --------------------------------DEEHIRLHNVPASPTLSSAAESEHGASMYEESR 242

  Fly   395 -----PGSPSPYGGSSLQQQ----PGSPTPYGGGGGGGGQVSCQSHSPSDSS 437
                 |||...|...::.:|    |.|.:|    ......||..|.|.|:.|
Zfish   243 HTSATPGSRLFYNFKNITKQSAAYPASVSP----ASSFRSVSSSSSSSSEDS 290

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
SoxN	NP_001260269.1	HMG-box_SoxB	177..252	CDD:438790	48/72 (67%)
sox11b	NP_571412.1	HMG-box_SoxC_SOX11	35..126	CDD:438846	50/79 (63%)