DRSC/TRiP Functional Genomics Resources

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Protein Alignment SoxN and sox11a

DIOPT Version :10

Sequence 1:NP_001260269.1 Gene:SoxN / 44275 FlyBaseID:FBgn0029123 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_571411.1 Gene:sox11a / 30602 ZFINID:ZDB-GENE-980526-395 Length:354 Species:Danio rerio


Alignment Length:122 Identity:56/122 - (45%)
Similarity:76/122 - (62%) Gaps:20/122 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   164 NNSATANKNQQHAD--------------------RVKRPMNAFMVWSRGQRRKMASDNPKMHNSE 208
            :||.|.:.:::..|                    .:|||||||||||:.:|||:...:|.|||:|
Zfish     6 DNSETDSMSREATDSDESEFMVSINPDWCKTATGHIKRPMNAFMVWSKIERRKIMEQSPDMHNAE 70

  Fly   209 ISKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKEHPDYKYRPRRKTKTLTKTKEKYP 265
            ||||||.:||.|.:|||.|||.||:|||..||.::|||||||::|.|..:.:|...|
Zfish    71 ISKRLGKRWKMLKDSEKIPFIREAERLRLKHMADYPDYKYRPKKKPKLDSSSKPSAP 127

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SoxNNP_001260269.1 HMG-box_SoxB 177..252 CDD:438790 49/94 (52%)
sox11aNP_571411.1 HMG-box_SF 30..107 CDD:469606 41/76 (54%)

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