DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SoxN and sox17

DIOPT Version :9

Sequence 1:NP_001260269.1 Gene:SoxN / 44275 FlyBaseID:FBgn0029123 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_571362.2 Gene:sox17 / 30544 ZFINID:ZDB-GENE-991213-1 Length:413 Species:Danio rerio


Alignment Length:542 Identity:125/542 - (23%)
Similarity:186/542 - (34%) Gaps:206/542 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   104 SSPLHSSSELSPTQSSIGSHHMTSPVSHQQHTQQQQHGQQQHLGAGSA-----LSSLTGGSSNNN 163
            |||....|...|:|:|..|..|..                   |.|..     ||.|:...|.:.
Zfish     2 SSPDAGYSSDDPSQTSSCSSVMMP-------------------GMGQCPWVDPLSPLSDSKSKHE 47

  Fly   164 NNSATANKNQQHADRVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPF 228
            ..||......:...|::|||||||||::.:|:::|..||.:||:|:||.||..||.|...:||||
Zfish    48 KCSAAGPGRGKSEPRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALPMVDKRPF 112

  Fly   229 IDEAKRLRAVHMKEHPDYKYRPRRK--TKTLTKTKEKYPMGGL--------MPGQTVGGGAPGEP 283
            ::||:|||..||::||:|||||||:  .|...:.:..:|:.|:        ..|.:.|....|.|
Zfish   113 VEEAERLRVKHMQDHPNYKYRPRRRKQVKRNKRLEPSFPLPGMCDAKMTLCTEGMSAGYSGAGLP 177

  Fly   284 VTPTRVQGQPGQNQSLNGSGGSAAAAAAAAAAAAQQARQDMYQMNAPNGYMPNGYMMHADPAGAA 348
                    |..:|.:|..|                      |.:..|            ||:...
Zfish   178 --------QYCENHTLFES----------------------YSLPTP------------DPSPMD 200

  Fly   349 AYQTSYMGQHYAAQRYDMGHMYNNGYAMYQTVSGGQTSPYGSSLQQPGSPSPYGGSSLQQQPGSP 413
            |..|.:..|......:...|...:.: ..||.....|..:|::            .:|:      
Zfish   201 AGTTEFFAQLQDQSAFSYHHQQEHHF-QEQTNILNDTHCHGNT------------QTLK------ 246

  Fly   414 TPYGGGGGGGGQVSCQSHSPSDSSIKSEPVSPSPSAIALNNNNNINNNHIMKREYSSAAAAAAAA 478
                         |.||||.:.|:|                |.|.|:|                 
Zfish   247 -------------SRQSHSIAYSNI----------------NTNTNSN----------------- 265

  Fly   479 AAAAAAGGGELNHLMNMYHLPDEQRHLLHYQTDSPDLQQQ-HQSMQQQQQHLPQQHL-------- 534
                             .|.|      ::.|..|.:|||. |::...|..|.|..||        
Zfish   266 -----------------LHAP------INAQLSSINLQQVFHENANPQISHHPGTHLNIFNRSPS 307

  Fly   535 -SQQHQQIPQ-----------QHHTMQQQQQQH----HLQHQQSLRAMAPLAHMXEMASAYGAAG 583
             |..|...|.           .:.:.|.::..|    |...|||:...     . :.::|..::|
Zfish   308 SSSHHAMTPAYLNCPSTLDTFYNSSSQMKELSHCVSSHTHKQQSIAEA-----QSQASTATHSSG 367

  Fly   584 SSVS------------VSPPLP 593
            ..|.            .|.|||
Zfish   368 QMVDEVEFEHCLSFGVPSAPLP 389

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SoxNNP_001260269.1 SOX-TCF_HMG-box 178..249 CDD:238684 39/70 (56%)
sox17NP_571362.2 SOX-TCF_HMG-box 62..133 CDD:238684 39/70 (56%)
Sox_C_TAD 186..411 CDD:288887 54/331 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000028
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10270
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
44.010

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