DRSC/TRiP Functional Genomics Resources

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Protein Alignment SoxN and Bbx

DIOPT Version :9

Sequence 1:NP_001260269.1 Gene:SoxN / 44275 FlyBaseID:FBgn0029123 Length:761 Species:Drosophila melanogaster
Sequence 2:XP_008766856.1 Gene:Bbx / 303970 RGDID:1309769 Length:938 Species:Rattus norvegicus


Alignment Length:144 Identity:39/144 - (27%)
Similarity:58/144 - (40%) Gaps:38/144 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   178 RVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKE 242
            |.:||||||:::.:..|..:..::|::.|...:|.|...|..|...||:.:.|.||..:...||.
  Rat    79 RARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKA 143

  Fly   243 HPDYKY---------------RPRRK-----------TKTLTKTK-EKYP-----------MGGL 269
            :|.|::               .||:|           ..|..|.| |:.|           ||||
  Rat   144 NPGYRWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRDLPTAKKAKTEEVPQLNFGMADPTQMGGL 208

  Fly   270 MPGQTVGGGAPGEP 283
            ......|..|.|.|
  Rat   209 SMLLLAGEHALGTP 222

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SoxNNP_001260269.1 SOX-TCF_HMG-box 178..249 CDD:238684 23/85 (27%)
BbxXP_008766856.1 SOX-TCF_HMG-box 79..150 CDD:238684 23/70 (33%)
DUF2028 191..>323 CDD:312980 9/32 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1641977at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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