DRSC/TRiP Functional Genomics Resources

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Protein Alignment SoxN and HBP1

DIOPT Version :9

Sequence 1:NP_001260269.1 Gene:SoxN / 44275 FlyBaseID:FBgn0029123 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_001231191.1 Gene:HBP1 / 26959 HGNCID:23200 Length:524 Species:Homo sapiens


Alignment Length:153 Identity:45/153 - (29%)
Similarity:70/153 - (45%) Gaps:13/153 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   110 SSELSPTQSSIGSHHMTSPVSHQQHTQQQQHGQQQHLGAGSALSSLTG--GSSNNNNNSATANKN 172
            |.:.:|..||  :.::.|.::.|:.......|......|.|..|...|  |||..::||..|...
Human   366 SYDFTPMDSS--AVYVLSSMARQRRASLSCGGPGGQDFARSGFSKNCGSPGSSQLSSNSLYAKAV 428

  Fly   173 QQHA---------DRVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPF 228
            :.|:         ::.||||||||::::..|.:.....|...|..||..||.:||.:...|:|.:
Human   429 KNHSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMY 493

  Fly   229 IDEAKRLRAVHMKEHPDYKYRPR 251
            ..|||.|.....:.:||...|.|
Human   494 TLEAKALAEEQKRLNPDCWKRKR 516

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SoxNNP_001260269.1 SOX-TCF_HMG-box 178..249 CDD:238684 25/70 (36%)
HBP1NP_001231191.1 AXH 224..350 CDD:197779
SOX-TCF_HMG-box 443..514 CDD:238684 25/70 (36%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1641977at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.920

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