DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SoxN and ste11

DIOPT Version :9

Sequence 1:NP_001260269.1 Gene:SoxN / 44275 FlyBaseID:FBgn0029123 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_596656.1 Gene:ste11 / 2540258 PomBaseID:SPBC32C12.02 Length:468 Species:Schizosaccharomyces pombe


Alignment Length:553 Identity:107/553 - (19%)
Similarity:187/553 - (33%) Gaps:165/553 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   166 SATANKNQQHADRVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFID 230
            |.||.:..|.:. ||||:|:||::.|.::.::.:.|   |.| ||:.:|..|::.|...|:.:.|
pombe     4 SLTAEQKDQKSS-VKRPLNSFMLYRRDRQAEIPTSN---HQS-ISRIIGQLWRNESAQVKKYYSD 63

  Fly   231 EAKRLRAVHMKEHPDYKYRPRRKTKTLTKTKEKYPMGG-------------LMPGQTVGGGAPGE 282
            .:...|..||.|:|:|||.|::::....:.|:..|..|             ....:|:....|.:
pombe    64 LSALERQKHMLENPEYKYTPKKRSTVRRRHKKVSPSSGSFVASDYVVLQQIAQSSKTLKQTEPEK 128

  Fly   283 PVTPTRVQGQPGQNQSLNGSGGSAAAAAAAAAAAAQQARQDMYQMNAPNGYMPNGYMM--HADPA 345
            ||         .:.::|       ||..|.|.:..:..:.::.: .:....:.:..|:  |..|:
pombe   129 PV---------NEEETL-------AALLAPALSYPKSGKSNLIE-TSELSCLSSSPMIRSHTIPS 176

  Fly   346 GAAAYQTSYMGQHYAAQRYDMGHMYNNGYAMYQTVSGGQTSPYGSSL----QQPGSPSPYGGSS- 405
            .:...|.|                     ....|:...:.:|  |||    :.|.|.||.|.:. 
pombe   177 LSFTDQVS---------------------TTISTLDKSEQAP--SSLGIYYRSPSSGSPIGRTKS 218

  Fly   406 --LQQQPGSPTPYGGGGGGGGQVSCQSHSPSDSSI-KSEPVSPSPS--AIALNNNNNINNNHIMK 465
              |..:              .::..:....||..: ||..:|.:||  |....|::|.:...:.|
pombe   219 VCLANK--------------ARIVPKRSMSSDGCVDKSYQMSKTPSLEANLPQNSSNCSARRVPK 269

  Fly   466 REYSSAAAAAAAAAAAAAAGGGELNHLMNMYHLPDEQRHLLHYQTDSPDLQQQHQSMQQQQQHLP 530
            .:.....:                           ||.:     :|||:|     |..:...|..
pombe   270 FDSKGTVS---------------------------EQSN-----SDSPEL-----SADKVLSHCS 297

  Fly   531 QQHLSQQHQQIPQQHHTMQQQQQQHHLQHQQSLRAMAPLAHMXEMASAYGAAGSSVSVSPPLPPY 595
            ...........|....:.:......|.....:.....||:.....|..||.....:|.     ||
pombe   298 PIDARPSTPSCPNASISPKTPNTGDHYGFDGAEYLGTPLSVGSTTAYLYGQETELLST-----PY 357

  Fly   596 MPTA-PQQQQQQQQQQQQLLNGRPSPTASGSSGGRSSAHSSGHT--------------------- 638
            ..|: |...:         ||.....|...||...:|.|:..:|                     
pombe   358 CHTSYPAMSR---------LNSSSGYTCVSSSSVTNSGHTENNTWRSDEQSKGFVDINSFSQSLF 413

  Fly   639 -------AAHSPALAAAY-QLTPSAATSSATSA 663
                   ||||..|...: |:|...:|....|:
pombe   414 SNGNYEFAAHSQELDDLFSQITDFTSTDPIASS 446

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SoxNNP_001260269.1 SOX-TCF_HMG-box 178..249 CDD:238684 25/70 (36%)
ste11NP_596656.1 MATA_HMG-box 16..87 CDD:238685 27/74 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0527
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000028
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.810

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