DRSC/TRiP Functional Genomics Resources

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Protein Alignment SoxN and Sox30

DIOPT Version :9

Sequence 1:NP_001260269.1 Gene:SoxN / 44275 FlyBaseID:FBgn0029123 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_775560.1 Gene:Sox30 / 214105 MGIID:1341157 Length:782 Species:Mus musculus


Alignment Length:279 Identity:77/279 - (27%)
Similarity:121/279 - (43%) Gaps:50/279 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   179 VKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKEH 243
            |||||||||||:|..|..:|..||..:|:|||.:||.:|..|||.:|:|:.|||::::..|.:|.
Mouse   366 VKRPMNAFMVWARIHRPALAKANPAANNAEISVQLGLEWNKLSEEQKKPYYDEAQKIKEKHREEF 430

  Fly   244 PDYKYRPR---RK-------------TKTLTKTKEK--YPMGG-----LMPG--QTVG---GGAP 280
            |.:.|:||   ||             |:.:..|...  ||...     ::||  .|:.   |.||
Mouse   431 PGWVYQPRPGKRKRFPLSVSNVFSGTTQNIISTNPTTIYPYRSPTYSVVIPGLQNTITHPVGEAP 495

  Fly   281 GEPVTPTRVQGQPGQNQSLNGSGGSAAAAAAAAAAAAQQARQDMYQMNAPNGYMPNGYMMHADPA 345
            .....||....:|........|..|....|....:...:......:.:.     |:...:|..|:
Mouse   496 PAIQLPTPAVQRPSPITLFQPSVSSTGPVAVPPPSLTPRPSLPPQRFSG-----PSQTDIHRLPS 555

  Fly   346 GAA-AYQTSYMGQHYAAQRYDMGHMYNNGYAMYQT--------VSGGQTSPYGSSLQQPGSPSPY 401
            |:: :.:.|..|...:..|...|  .:..:|.:.|        .:...|.|..:.: .|.:|.|:
Mouse   556 GSSRSVKRSTPGSLESTTRIPAG--ASTAHARFATSPIQPPKEYASVSTCPRSTPI-PPATPIPH 617

  Fly   402 GGSSLQQQP--GSP-TPYG 417
              |.:.|.|  |.| |.:|
Mouse   618 --SHVYQPPPLGHPATLFG 634

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SoxNNP_001260269.1 SOX-TCF_HMG-box 178..249 CDD:238684 34/69 (49%)
Sox30NP_775560.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..37
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 95..117
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 139..226
SOX-TCF_HMG-box 365..435 CDD:238684 34/68 (50%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 501..604 17/109 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 704..724
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 756..782
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0527
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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