DRSC/TRiP Functional Genomics Resources

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Protein Alignment SoxN and Sox18

DIOPT Version :10

Sequence 1:NP_001260269.1 Gene:SoxN / 44275 FlyBaseID:FBgn0029123 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_033262.2 Gene:Sox18 / 20672 MGIID:103559 Length:377 Species:Mus musculus


Alignment Length:292 Identity:88/292 - (30%)
Similarity:131/292 - (44%) Gaps:82/292 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   173 QQHAD--RVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRL 235
            :|.||  |::|||||||||::.:|:::|..||.:||:.:||.||..||:|:.:|||||::||:||
Mouse    71 RQTADELRIRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLGKAWKELNTAEKRPFVEEAERL 135

  Fly   236 RAVHMKEHPDYKYRPRRKTKTLTKTKEKYPMGGLMPGQTVGGGAPGEPVTPTRVQGQPGQNQSLN 300
            |..|:::||:|||||||| |...|.:...| |.|:|| .|...||.|                  
Mouse   136 RVQHLRDHPNYKYRPRRK-KQARKVRRLEP-GLLLPG-LVQPSAPPE------------------ 179

  Fly   301 GSGGSAAAAAAAAAAAAQQARQ--------DMYQMNAPNGYMPNGYMMHADPAGAAAYQTSYMGQ 357
                    |.|||:.:|:..|:        |...:..|.....:|    .:|..|:.:......:
Mouse   180 --------AFAAASGSARSFRELPTLGAEFDGLGLPTPERSPLDG----LEPGEASFFPPPLAPE 232

  Fly   358 HYAAQRYDMGHMYNNGYAMYQTVSGGQTSPYGSSLQQPGSPSPYGGSSLQQ-----QPGSPTP-- 415
            ..|.:.:                    .:||...|.:  .||...|:.|.:     .|.:|..  
Mouse   233 DCALRAF--------------------RAPYAPELAR--DPSFCYGAPLAEALRTAPPAAPLAGL 275

  Fly   416 -YGGGGGGGGQVSCQSHSPSDSSIKSEPVSPS 446
             ||..|..|         |..:.:...|.|||
Mouse   276 YYGTLGTPG---------PFPNPLSPPPESPS 298

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SoxNNP_001260269.1 HMG-box_SoxB 177..252 CDD:438790 42/76 (55%)
Sox18NP_033262.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..76 2/4 (50%)
HMG-box_SoxF_SOX18 76..155 CDD:438851 44/79 (56%)
Interaction with DNA. /evidence=ECO:0000269|PubMed:26939885 81..94 9/12 (75%)
Interaction with DNA. /evidence=ECO:0000269|PubMed:26939885 105..117 6/11 (55%)
Important for transcriptional activation. /evidence=ECO:0000269|PubMed:10742113, ECO:0000269|PubMed:7651823 160..225 20/96 (21%)
Sox17_18_mid 191..239 CDD:463454 7/51 (14%)
9aaTAD. /evidence=ECO:0000250|UniProtKB:P35713 318..326
Blue background indicates that the domain is not in the aligned region.

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