Protein Alignment SoxN and sox-3

DIOPT Version :9

• Sequence 1: NP_001260269.1
• Gene: SoxN / 44275
• FlyBaseID: FBgn0029123
• Length: 761
• Species: Drosophila melanogaster
• Sequence 2: NP_510439.1
• Gene: sox-3 / 185534
• WormBaseID: WBGene00004950
• Length: 212
• Species: Caenorhabditis elegans
• Alignment Length: 171
• Identity: 90/171 - (52%)
• Similarity: 103/171 - (60%)
• Gaps: 36/171 - (21%)

  Fly   173 QQHADRVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRA 237
            |...|.||||||||||||||||||||.||||||||||||||||:||.|||.||||||||||||||
 Worm    42 QNSLDHVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKQLSEQEKRPFIDEAKRLRA 106

  Fly   238 VHMKEHPDYKYRPRRKTKTLTKTKEKYPMGGLMPGQTVGGGAPGEPVTP---------------- 286
            :|||||||||||||||.|: :..|::..:...||           .:.|
 Worm   107 LHMKEHPDYKYRPRRKPKS-SNLKQQPRLNIAMP-----------TIPPQSLFNYSTAFDSLKTH 159

  Fly   287 --TRVQGQPGQNQSLNGSG------GSAAAAAAAAAAAAQQ 319
              ::......|:..|:||.      .:|.|..|||.|||.|
 Worm   160 DLSQYYSSFFQSPVLSGSTYAPYNMMAAYARQAAAVAAASQ 200

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
SoxN	NP_001260269.1	SOX-TCF_HMG-box	178..249	CDD:238684	64/70 (91%)
sox-3	NP_510439.1	SOX-TCF_HMG-box	47..118	CDD:238684	64/70 (91%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	1	1.000	139	1.000	Domainoid score	I2973
eggNOG	1	0.900	-	-		E1_KOG0527
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	1	0.950	-	0	Normalized mean entropy	S1275
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0000028
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	1	0.900	-	-		OOG6_106862
Panther	1	1.100	-	-	O	PTHR10270
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	8	7.760